PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G369993_P01
Common NameLOC103639997
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 440aa    MW: 48968.3 Da    PI: 6.1155
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G369993_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.7e-08171234147
                        TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqky 47 
                        r+ WT+e++e+lv+a  ++ ++            W  I +t +       +Rt+kq+k++w +y
  GRMZM2G369993_P01 171 RLEWTKEDEEKLVNAWFMHSNDpisgnnksgssFWGQIVATYNstsdpiCHRTAKQLKDHWVTY 234
                        789******************************999999999999998889**********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.446166235IPR017877Myb-like domain
SuperFamilySSF466892.17E-5170250IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-5170235IPR009057Homeodomain-like
SMARTSM007172.1E-4170237IPR001005SANT/Myb domain
CDDcd001679.08E-4173234No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009054anatomyinflorescence bract
PO:0020136anatomyear inflorescence
PO:0007001developmental stageearly whole plant fruit ripening stage
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MSGWSPDLNT FTDLLQSDGS PTTLPLDESS SLHRRSDVSA SLPRALFPAA RPPPYPYPYH  60
LYQYPSSSYG QPPTSQAGIQ ASFPVRPYAP PPPAADGSQA SFQIPPYAPP PYAPPPYGVP  120
PYAPYAPPPY GAPHPYAPPT YGAPPPVAPL SVGSENQAEE NPVPKEKRPK RLEWTKEDEE  180
KLVNAWFMHS NDPISGNNKS GSSFWGQIVA TYNSTSDPIC HRTAKQLKDH WVTYNREVTK  240
FNGFYLQEER LRQSGADDSM VMDAAMARFE GKMGHPFKRH HWWQVVRHEP KWSAKHGLGN  300
GSDSTANKRT RLGVSGEYSS GGTEDTEEEV PRPVGRDRAK AAARKTKMKG KGKEATSSES  360
TSEAFKIKNL WGGLVKAKLL KQWNILKGQS TRDMDPAERR THGRAVKMVE KELGLLDDEE  420
EEPEAEREEE EDEDEIEESD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1037880.0endosperm| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G369993
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G369993_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5176000.0EF517600.2 Zea mays clone BACs ZMMBBb0345O22, ZMMBBc0294D02, ZMMBBb0103L15, ZMMBBb0622H01, and ZMMBBb0335C07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008662552.10.0ribonuclease 3
TrEMBLA0A1D6KE420.0A0A1D6KE42_MAIZE; Uncharacterized protein
STRINGGRMZM2G369993_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3263337