PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G369799_P01 | ||||||||
Common Name | LOC103650675, MYB127, Zm.13484 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 264aa MW: 27798.1 Da PI: 8.8837 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.1 | 8.8e-18 | 20 | 65 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd ll ++v+q+G+++W++I++ ++ gR++k+c++rw + GRMZM2G369799_P01 20 KGSWSPEEDALLTRLVEQHGPHRWSLISAPIP-GRSGKSCRLRWCNQ 65 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 56.5 | 6.6e-18 | 74 | 116 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed l++ a++++G++ W+tIar ++ gRt++++k++w++ GRMZM2G369799_P01 74 PFTPHEDALILAAHARYGNK-WATIARLLP-GRTDNSIKNHWNSN 116 89******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.925 | 15 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.77E-31 | 17 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.8E-16 | 19 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-17 | 20 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-25 | 21 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.34E-14 | 22 | 64 | No hit | No description |
PROSITE profile | PS51294 | 19.327 | 71 | 121 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-15 | 71 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.2E-15 | 74 | 116 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.35E-12 | 74 | 117 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.0E-23 | 74 | 119 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 264 aa Download sequence Send to blast |
MMKNYPGPAS SSSVAVEVKK GSWSPEEDAL LTRLVEQHGP HRWSLISAPI PGRSGKSCRL 60 RWCNQLSPDV HHRPFTPHED ALILAAHARY GNKWATIARL LPGRTDNSIK NHWNSNLRRC 120 RRRAAAAAVA SRPQVQDSDD APAAAAAHDD QPAAVVAAGG LGGGNSSSGL PPAAAGAATA 180 EAEPSLSLSL GLPLPAAEPA EAAADDESRN SQGQASPLLE EGEGNAQLLA VVRRMVREEV 240 QRQTGQLAYS LMAAAAARAK GHHR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-37 | 17 | 119 | 1 | 103 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.13484 | 0.0 | endosperm |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G369799 |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G369799_P01 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ727524 | 0.0 | KJ727524.1 Zea mays clone pUT5383 MYB transcription factor (MYB127) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008674458.1 | 0.0 | transcription factor MYB44 | ||||
Swissprot | O23160 | 1e-51 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A0A060D156 | 0.0 | A0A060D156_MAIZE; MYB transcription factor (Fragment) | ||||
TrEMBL | A0A3L6FND4 | 0.0 | A0A3L6FND4_MAIZE; Transcription factor MYB44 | ||||
STRING | GRMZM2G369799_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13544 | 27 | 31 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37260.1 | 4e-49 | myb domain protein 73 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G369799_P01 |
Entrez Gene | 103650675 |
Publications ? help Back to Top | |||
---|---|---|---|
|