PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G369629_P02 | ||||||||
Common Name | Zm.32829 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 259aa MW: 27826.8 Da PI: 10.1194 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32 | 2.3e-10 | 67 | 111 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++E+rRR+riN +++Lr+++P a ++Ka+ L ++v +k+L GRMZM2G369629_P02 67 HSAAEKRRRERINAHLATLRRMIPDA-----SQMDKATLLARVVCQLKDL 111 99***********************9.....5799999998888777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.77E-12 | 53 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.954 | 62 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.3E-11 | 66 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.06E-9 | 67 | 114 | No hit | No description |
Pfam | PF00010 | 6.6E-8 | 67 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-9 | 68 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 1.3E-4 | 155 | 215 | No hit | No description |
CDD | cd04873 | 1.08E-6 | 157 | 221 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MASTASQPFQ EGKQHLHLNH GGRALHSAYG GTAAWPASSV TPPLTRLETP ASSSKSTAEA 60 RQALKIHSAA EKRRRERINA HLATLRRMIP DASQMDKATL LARVVCQLKD LKKKSAETTQ 120 PPLATIPGET NEIAVVCCTG TASTAYERAA ATYIRASVSC DDRPGLHADL AGALRAMRLR 180 PLRADMAALG GRAQCDFVLC REDGAGCRTL KALEEGVRQA LAKAAFPETP PYGCNAARSR 240 RQRLAGSHCY LHGFVAKLY |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G369629 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G369629_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068900 | 0.0 | BT068900.1 Zea mays full-length cDNA clone ZM_BFc0165O19 mRNA, complete cds. | |||
GenBank | EU973505 | 0.0 | EU973505.1 Zea mays clone 399867 DNA binding protein mRNA, complete cds. | |||
GenBank | KJ726871 | 0.0 | KJ726871.1 Zea mays clone pUT3412 bHLH transcription factor (bHLH123) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001152068.1 | 0.0 | uncharacterized protein LOC100285705 | ||||
Refseq | XP_008647968.1 | 0.0 | DNA binding protein isoform X1 | ||||
Refseq | XP_008647969.1 | 0.0 | DNA binding protein isoform X1 | ||||
TrEMBL | B6U8E0 | 0.0 | B6U8E0_MAIZE; BHLH transcription factor | ||||
STRING | GRMZM2G369629_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 4e-24 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G369629_P02 |