PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G369629_P01 | ||||||||
Common Name | bHLH123, Zm.32829 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 272aa MW: 29041 Da PI: 9.9942 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.8 | 2.5e-10 | 67 | 111 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++E+rRR+riN +++Lr+++P a ++Ka+ L ++v +k+L GRMZM2G369629_P01 67 HSAAEKRRRERINAHLATLRRMIPDA-----SQMDKATLLARVVCQLKDL 111 99***********************9.....5799999998888777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.55E-12 | 53 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.954 | 62 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.6E-11 | 66 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.97E-10 | 67 | 114 | No hit | No description |
Pfam | PF00010 | 7.1E-8 | 67 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-9 | 68 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 1.4E-4 | 155 | 215 | No hit | No description |
CDD | cd04873 | 1.19E-6 | 157 | 221 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MASTASQPFQ EGKQHLHLNH GGRALHSAYG GTAAWPASSV TPPLTRLETP ASSSKSTAEA 60 RQALKIHSAA EKRRRERINA HLATLRRMIP DASQMDKATL LARVVCQLKD LKKKSAETTQ 120 PPLATIPGET NEIAVVCCTG TASTAYERAA ATYIRASVSC DDRPGLHADL AGALRAMRLR 180 PLRADMAALG GRAQCDFVLC REDGAGCRTL KALEEGVRQA LAKAAFPETP PYGCNAARSR 240 RQRLAGSHCV LHGHGHGHGH GHGLHVIGEH GW |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G369629 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G369629_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068900 | 0.0 | BT068900.1 Zea mays full-length cDNA clone ZM_BFc0165O19 mRNA, complete cds. | |||
GenBank | EU973505 | 0.0 | EU973505.1 Zea mays clone 399867 DNA binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001152068.1 | 0.0 | uncharacterized protein LOC100285705 | ||||
Refseq | XP_008647968.1 | 0.0 | DNA binding protein isoform X1 | ||||
Refseq | XP_008647969.1 | 0.0 | DNA binding protein isoform X1 | ||||
TrEMBL | B6U8E0 | 0.0 | B6U8E0_MAIZE; BHLH transcription factor | ||||
STRING | GRMZM2G369629_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3347 | 36 | 78 | Representative plant | OGRP377 | 15 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 1e-22 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G369629_P01 |
Entrez Gene | 100285705 |
Publications ? help Back to Top | |||
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