PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G368909_P01
Common NameGRAS40, LOC103644258, Zm.10558
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 645aa    MW: 72646.3 Da    PI: 6.9815
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G368909_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS377.71.4e-1152746442374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                        ++lL++cA+a + +d+++ ++lL+++++++s +gd+ qRla+yf+ +L+arla+s+s++y++l++++ts   + + l+a++l+++++P+  +
  GRMZM2G368909_P01 274 TTLLIHCAQAAAIDDHRNSSELLKQIRKHSSATGDAGQRLAHYFADGLEARLAGSGSSIYRSLAAKRTS---TGDILKAFSLYVKACPFRIL 362
                        689************************************************************999999...899***************** PP

               GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183
                        sh +aN +Il+a+++++r+HiiD++i++G+QWp L+q L++Rp+gpp lRiTg++ p sg   +e++e+tg+rL+++A+ ++vpfe+++ +a
  GRMZM2G368909_P01 363 SHYVANTTILNATKSATRLHIIDYGIMYGFQWPVLMQRLSKRPGGPPYLRITGIDFPLSGfrPAERVEATGRRLHEYARMFNVPFEYQA-IA 453
                        *********************************************************99999***************************.79 PP

               GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                         +++++++++L++k++E ++Vn+ +++ +++de+v+ +s+r++vL+++++l+P+++v+   +  +n++ F++rf ea+ ++s++fd+lea++
  GRMZM2G368909_P01 454 AKWDTIQVKDLNMKSDEFVVVNCLYRMRNMMDETVTDDSPRTRVLNTIRKLNPHLFVHGIVNGTYNAPFFVTRFKEAMFFFSSIFDMLEANA 545
                        9******************************************************************************************* PP

               GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                         r +e+r  +Ere++gre+vnv+aceg+er+er et+++W++r  +aGF++++l+ +++k a++ ++k ++  + v+e+++++++gWk+r +
  GRMZM2G368909_P01 546 LRMDEHRLLIEREFFGREAVNVIACEGTERIERPETYKQWQMRNLRAGFRQLALDREIMKRARYKVSKSYQGDFLVDEDNKWMLQGWKGRII 637
                        **********************************************************************777******************* PP

               GRAS 368 vsvSaWr 374
                        +++SaW+
  GRMZM2G368909_P01 638 YALSAWT 644
                        ******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.369247624IPR005202Transcription factor GRAS
PfamPF035144.9E-113274644IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MIMDPRPRDD PNLGARLPTP NPPAPHMISF SLQQPQLQFF PSYGFHGHSH SSPVSSHPSP  60
PSAMPGCTTP SPASTTTTEP DSVEDFSETV ADDAVLAYIN QFLLEDEDEE SYPITSAPVE  120
DSALLAAVEK PFVDILESAK PIAAQGYEVK SWITDDCDST GSGRFRDVVT SSLPREMVRE  180
GLVGAAHKGQ KNPRDEDMEM EGRKSKQSAL CDEETVREMF DKVLLCTDKN CEFHSPMPAD  240
AQISGGYVKG SRNKRGRRKG RSGSGAEEEP VDLTTLLIHC AQAAAIDDHR NSSELLKQIR  300
KHSSATGDAG QRLAHYFADG LEARLAGSGS SIYRSLAAKR TSTGDILKAF SLYVKACPFR  360
ILSHYVANTT ILNATKSATR LHIIDYGIMY GFQWPVLMQR LSKRPGGPPY LRITGIDFPL  420
SGFRPAERVE ATGRRLHEYA RMFNVPFEYQ AIAAKWDTIQ VKDLNMKSDE FVVVNCLYRM  480
RNMMDETVTD DSPRTRVLNT IRKLNPHLFV HGIVNGTYNA PFFVTRFKEA MFFFSSIFDM  540
LEANALRMDE HRLLIEREFF GREAVNVIAC EGTERIERPE TYKQWQMRNL RAGFRQLALD  600
REIMKRARYK VSKSYQGDFL VDEDNKWMLQ GWKGRIIYAL SAWTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-502776438374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.105580.0ear| leaf| meristem| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G368909
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G368909_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280030.0KJ728003.1 Zea mays clone pUT6134 GRAS transcription factor (GRAS40) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008665687.10.0scarecrow-like protein 30
SwissprotQ9XE581e-170SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A060D8230.0A0A060D823_MAIZE; GRAS transcription factor (Fragment)
STRINGGRMZM2G368909_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138412529
Representative plantOGRP26615129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-170SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]