PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G368838_P01 | ||||||||
Common Name | EREB68, LOC100281151 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 212aa MW: 22205.3 Da PI: 8.0018 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.1 | 8e-17 | 17 | 65 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +++g+Wv+eIr+p++ ++r++lg+f tae+Aa a++ a+++l+g GRMZM2G368838_P01 17 FYRGIR--SRSGKWVSEIREPRK---TRRIWLGTFPTAEMAAVAYDVAARALRG 65 69***6..678*********843...5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 19.862 | 17 | 73 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-18 | 17 | 74 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.2E-29 | 17 | 79 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.4E-9 | 18 | 65 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-26 | 18 | 74 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.75E-25 | 18 | 75 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MSDRGGPASP RSGKHPFYRG IRSRSGKWVS EIREPRKTRR IWLGTFPTAE MAAVAYDVAA 60 RALRGPDAAL NLPHLAASRP APASTSADDI RAAAAEAAAS LQQPDHQPPA HGSAAGRGIA 120 AAAAGATQQQ HQHQQQAGGS SGAAQHEGGG GGAGNPYFLD EEALFETPQY LRNMAAGMMM 180 SPPRFGRNSS DDSPDHPSSS DAGDSLWNYR DP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-13 | 14 | 74 | 11 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G368838 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00558 | DAP | Transfer from AT5G52020 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G368838_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU955751 | 0.0 | EU955751.1 Zea mays clone 1544743 ap2/EREBP transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001147542.1 | 1e-151 | uncharacterized LOC100281151 | ||||
Refseq | XP_008667902.1 | 1e-151 | ap2/EREBP transcription factor isoform X1 | ||||
TrEMBL | A0A3L6FYV1 | 1e-149 | A0A3L6FYV1_MAIZE; Ethylene-responsive transcription factor ERF025 | ||||
TrEMBL | B6SSN6 | 1e-149 | B6SSN6_MAIZE; Ap2/EREBP transcription factor | ||||
STRING | GRMZM2G368838_P01 | 1e-150 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3654 | 27 | 62 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 4e-20 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G368838_P01 |
Entrez Gene | 100281151 |
Publications ? help Back to Top | |||
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