PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G366795_P02
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 557aa    MW: 59197.2 Da    PI: 6.6743
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G366795_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.12.7e-31310368259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +Dg++WrKYGqK+ kg+++prsYYrCt+a gCpv+k+v+r+aed++vv++tYeg+Hnh+
  GRMZM2G366795_P02 310 SDGCQWRKYGQKMAKGNPCPRSYYRCTMAaGCPVRKQVQRCAEDTTVVVTTYEGNHNHP 368
                        7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.2E-34294370IPR003657WRKY domain
SuperFamilySSF1182903.27E-28302370IPR003657WRKY domain
PROSITE profilePS5081130.618304370IPR003657WRKY domain
SMARTSM007745.8E-38309369IPR003657WRKY domain
PfamPF031068.5E-27311368IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MESSCLGKRR LNGAERAPPA FLPLGYEYGD ADAVDHMPHR LETGEMDFFK REKRERKADA  60
AAPDDLGIKE EDITINMGLH HVGRWKNRSE ESVDEGVSSN DGDTREMKTE LALTKSELGR  120
LNEENKQLKN ILTRLTSSNS NPLQMQMQAL TTMQQRTSIT SCSCHRQLNV DPEKKKDQEG  180
SRGGGHLLPQ QFIGLSTPAL SFDDPLRFVA SDVQGGESSA STSNVEPPPT TTTMEMMPLP  240
AFEHGHHQHL AHERGSSSSP DEPPSHHLAV NQGWLSNKVA KFLPVKGPEP ATMRKARVSV  300
RARSEVLMIS DGCQWRKYGQ KMAKGNPCPR SYYRCTMAAG CPVRKQVQRC AEDTTVVVTT  360
YEGNHNHPLP PAAMPMASTT TTASSMLLSG SMPSAEGSSL MAGSNFLARA VLPCSSSVAT  420
ISASAPFPTV ALDLTQPLPP QAQARSTTEP SQLQAALADA AGRPTPQLFG QKLYDPSSSK  480
APAASQGADA AGDTVSAAAV IASDPNFPAV LAAAIKSYIS GNGSGGGNSG TTVLPPPPAA  540
SSADDSSRDD KAGEQGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-23300370877Probable WRKY transcription factor 4
2lex_A1e-23300370877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G366795
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G366795_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209865e-86AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence.
GenBankAP0149615e-86AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020395760.10.0WRKY transcription factor 42
TrEMBLA0A1D6MD190.0A0A1D6MD19_MAIZE; Putative WRKY DNA-binding domain superfamily protein
STRINGGRMZM2G366795_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.19e-65WRKY family protein