PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G366795_P01
Common NameLOC103630747
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 559aa    MW: 59415.4 Da    PI: 6.7207
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G366795_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.12.7e-31312370259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +Dg++WrKYGqK+ kg+++prsYYrCt+a gCpv+k+v+r+aed++vv++tYeg+Hnh+
  GRMZM2G366795_P01 312 SDGCQWRKYGQKMAKGNPCPRSYYRCTMAaGCPVRKQVQRCAEDTTVVVTTYEGNHNHP 370
                        7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081129.539306372IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-31306372IPR003657WRKY domain
SuperFamilySSF1182902.62E-27310372IPR003657WRKY domain
SMARTSM007745.8E-38311371IPR003657WRKY domain
PfamPF031068.5E-27313370IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0020142anatomystem internode
PO:0025142anatomyleaf tip
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MESSCLGKRR LNGAERAPPA FLPLGYEYGD ADAVDHMPHR LETGEMDFFK REKRERKADA  60
AAPDDLGIKE EDITINMGLH HVGRWKNRSE ESVDEGVSSN DGDTREMKTE LALTKSELGR  120
LNEENKQLKN ILTRLTSSNS NPLQMQMQAL TTMQQLRNNI IHRGLRGAPS HELNVDPEKK  180
KDQEGSRGGG HLLPQQFIGL STPALSFDDP LRFVASDVQG GESSASTSNV EPPPTTTTME  240
MMPLPAFEHG HHQHLAHERG SSSSPDEPPS HHLAVNQGWL SNKVAKFLPV KGPEPATMRK  300
ARVSVRARSE ISDGCQWRKY GQKMAKGNPC PRSYYRCTMA AGCPVRKQVQ RCAEDTTVVV  360
TTYEGNHNHP LPPAAMPMAS TTTTASSMLL SGSMPSAEGS SLMAGSNFLA RAVLPCSSSV  420
ATISASAPFP TVALDLTQPL PPQAQARSTT EPSQLQAALA DAAGRPTPQL FGQKLYDPSS  480
SKAPAASQGA DAAGDTVSAA AVIASDPNFP AVLAAAIKSY ISGNGSGGGN SGTTVLPPPP  540
AASSADDSSR DDKAGEQGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-213113721777Probable WRKY transcription factor 4
2lex_A3e-213113721777Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G366795
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G366795_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209866e-86AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence.
GenBankAP0149616e-86AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020395760.10.0WRKY transcription factor 42
TrEMBLA0A1D6MD190.0A0A1D6MD19_MAIZE; Putative WRKY DNA-binding domain superfamily protein
STRINGGRMZM2G366795_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126952734
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.12e-62WRKY family protein