PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G366434_P01
Common NameZm.122523
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family AP2
Protein Properties Length: 679aa    MW: 71763.3 Da    PI: 6.3467
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G366434_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.22.3e-14278337155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  GRMZM2G366434_P01 278 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVHLGGYDKEDKAARAYDLAALKYWG 337
                        57*******************666664477446**********99*************98 PP
2AP249.88.6e-16380431155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  GRMZM2G366434_P01 380 SKYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 431
                        89****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-11278337IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-16278347IPR016177DNA-binding domain
CDDcd000186.56E-19278347No hitNo description
PROSITE profilePS5103218.268279345IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-14279346IPR001471AP2/ERF domain
SMARTSM003802.6E-27279351IPR001471AP2/ERF domain
PRINTSPR003673.5E-6280291IPR001471AP2/ERF domain
PfamPF008473.0E-10380431IPR001471AP2/ERF domain
CDDcd000181.70E-23380441No hitNo description
SuperFamilySSF541715.56E-18380441IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-18381440IPR001471AP2/ERF domain
PROSITE profilePS5103219.467381439IPR001471AP2/ERF domain
SMARTSM003808.1E-34381445IPR001471AP2/ERF domain
PRINTSPR003673.5E-6421441IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010073Biological Processmeristem maintenance
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0009089anatomyendosperm
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MASANNWLGF SLSGQDNPQP NQDSSPAAGI DISGASDFYG LPTQQGSDGH LGVPGLRDDH  60
ASYGIMEAYN RVPQETQDWN MRGLDYNGGG SELSMLVGSS GGGGGNGKRA VEDSEPKLED  120
FLGGNSFVSD QDQSGGYLFS GVPIASSANS NSGSNTMELS MIKTWLRNNQ VAQPQPPAPH  180
QPQPEEMSTD ASGSSFGCSD SMGRNSMVAA GGSSQSLALS MSTGSHLPMV VPSGAASGAA  240
SESTSSENKR ASGAMDSPGS AVEAVPRKSI DTFGQRTSIY RGVTRHRWTG RYEAHLWDNS  300
CRREGQSRKG RQVHLGGYDK EDKAARAYDL AALKYWGTTT TTNFPISNYE KELEEMKHMT  360
RQEYIAYLRR NSSGFSRGAS KYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTEEEAAE  420
AYDIAAIKFR GLNAVTNFDM SRYDVKSILE SSTLPVGGAA RRLKDAVDHV EAGATIWRAD  480
MDGAVISQLA EAGMGGYASY GHHGWPTIAF QQPSPLSVHY PYGQPSRGWC KPEQDAAAAA  540
AHSLQDLQQL HLGSAAHNFF QASSSSTVYN GGAGASGGYQ GLGGGSSFLM PSSTVVAAAD  600
QGHSSTANQG STCSYGDDHQ EGKLIGYDAA MVATAAGGDP YAAARNGYQF SQGSGSTVSI  660
ARANGYANNW SSPFNNGMG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1225230.0embryo
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G366434
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo throughout embryogenesis. Also present in free nuclear endosperm, but disappears once endosperm cellularization begins. {ECO:0000269|PubMed:12172019}.
UniprotTISSUE SPECIFICITY: Mostly expressed in developing seeds. {ECO:0000269|PubMed:12172019}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G366434_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557320.0EU955732.1 Zea mays clone 1543867 protein BABY BOOM 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147535.10.0protein BABY BOOM 1
SwissprotQ8LSN21e-134BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLB6SSL70.0B6SSL7_MAIZE; Protein BABY BOOM 1
STRINGGRMZM2G366434_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-123AP2 family protein