PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G361847_P07

Common Name

gpm517

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

bZIP

Protein Properties

Length: 240aa MW: 26366.8 Da PI: 8.4525

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G361847_P07	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.7	3.3e-10	27	66	5	44
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 k rr+++NReAAr+sR+RKka++++Le +L + ++ GRMZM2G361847_P07 27 KTMRRLAQNREAARKSRLRKKAYVQQLESSKLKLAQLEQE 66 7789************************855444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.5E-6	22	86	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.45	25	69	IPR004827	Basic-leucine zipper domain
CDD	cd14708	2.23E-21	27	79	No hit	No description
Pfam	PF00170	3.5E-7	27	68	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.75E-7	27	70	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.9E-8	28	72	No hit	No description
PROSITE pattern	PS00036	0	30	45	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.4E-32	109	181	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MENGSGAVVP SNSSDRSDRS DKPLDQKTMR RLAQNREAAR KSRLRKKAYV QQLESSKLKL 60 AQLEQELQKA RQQGIFISSS GDQTHAMSGN GALTFDIEYA RWLEDQNKQI NELRTAVNAH 120 ASDSDLRLIV DGIMAHYDEI FKVKGVAAKA DVFHILSGMW KTPAERCFLW LGGFRPSELL 180 KQSSQQAEDA LSQGMEALQQ SLAETLAGSL GPAGSSGNVA NYMGQMAMAM GKLGTLENFL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.156662	0.0	endosperm\| leaf

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G361847

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a negative role in rice basal defense responses to the bacterial blight pathogen Xanthomomas oryzae pv. oryzae (Xoo). May function in both positive and negative regulation of rice defense genes. Binds DNA in vitro (PubMed:16045470). Acts as transcriptional activator when bound to NPR1/NH1 in vitro (PubMed:22353606). Binds to the promoter sequence of CRK10 in vitro (PubMed:27176732). {ECO:0000269\|PubMed:16045470, ECO:0000269\|PubMed:22353606, ECO:0000269\|PubMed:27176732}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G361847_P07

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT061586	0.0	BT061586.1 Zea mays full-length cDNA clone ZM_BFb0161M21 mRNA, complete cds.
GenBank	JX469937	0.0	JX469937.1 Zea mays subsp. mays clone UT3196 bZIP-type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001333859.1	1e-162	uncharacterized protein LOC100279481
Refseq	XP_008651318.1	1e-162	uncharacterized protein LOC100279481 isoform X2
Refseq	XP_008651320.1	1e-162	uncharacterized protein LOC100279481 isoform X2
Refseq	XP_020396043.1	1e-162	uncharacterized protein LOC100279481 isoform X2
Refseq	XP_020396044.1	1e-162	uncharacterized protein LOC100279481 isoform X2
Refseq	XP_020396045.1	1e-162	uncharacterized protein LOC100279481 isoform X6
Refseq	XP_020396047.1	1e-162	uncharacterized protein LOC100279481 isoform X6
Swissprot	Q7X993	1e-143	TGA21_ORYSJ; Transcription factor TGA2.1
TrEMBL	A0A1D6INY9	1e-175	A0A1D6INY9_MAIZE; Transcription factor TGA6
STRING	GRMZM2G361847_P01	1e-161	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.5	1e-106	TGACG motif-binding factor 6

Link Out ? help Back to Top
Phytozome	GRMZM2G361847_P07

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Chern M, et al. A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation. Plant Methods, 2012. 8(1): p. 6 [PMID:22353606] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Chern M, et al. A Genetic Screen Identifies a Requirement for Cysteine-Rich-Receptor-Like Kinases in Rice NH1 (OsNPR1)-Mediated Immunity. PLoS Genet., 2016. 12(5): p. e1006049 [PMID:27176732]