PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G361847_P04
Common Namegpm517
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bZIP
Protein Properties Length: 157aa    MW: 17633 Da    PI: 10.3715
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G361847_P04genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.71.6e-104281544
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44
                       k  rr+++NReAAr+sR+RKka++++Le    +L +  ++
  GRMZM2G361847_P04 42 KTMRRLAQNREAARKSRLRKKAYVQQLESSKLKLAQLEQE 81
                       7789************************855444444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.5E-637101IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.454084IPR004827Basic-leucine zipper domain
PfamPF001701.7E-74283IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.0E-74385No hitNo description
Gene3DG3DSA:1.20.5.1702.3E-84387No hitNo description
PROSITE patternPS0003604560IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MIAMNPDMVL LSWKQMENGS GAVVPSNSSD RSDRSDKPLD QKTMRRLAQN REAARKSRLR  60
KKAYVQQLES SKLKLAQLEQ ELQKARQQGI FISSSGDQTH AMSGNGALTF DIEYARWLED  120
QNKQINELRT AVNAHACGRH LLKGASYGLG VFVHLSF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1566620.0endosperm| leaf
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G361847
Functional Description ? help Back to Top
Source Description
UniProtPlays a negative role in rice basal defense responses to the bacterial blight pathogen Xanthomomas oryzae pv. oryzae (Xoo). May function in both positive and negative regulation of rice defense genes. Binds DNA in vitro (PubMed:16045470). Acts as transcriptional activator when bound to NPR1/NH1 in vitro (PubMed:22353606). Binds to the promoter sequence of CRK10 in vitro (PubMed:27176732). {ECO:0000269|PubMed:16045470, ECO:0000269|PubMed:22353606, ECO:0000269|PubMed:27176732}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G361847_P04
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0543210.0BT054321.1 Zea mays full-length cDNA clone ZM_BFb0324B20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008651321.15e-93uncharacterized protein LOC100279481 isoform X4
RefseqXP_020396046.15e-93uncharacterized protein LOC100279481 isoform X4
SwissprotQ7X9933e-63TGA21_ORYSJ; Transcription factor TGA2.1
TrEMBLB7ZYC91e-113B7ZYC9_MAIZE; Uncharacterized protein
STRINGGRMZM2G361847_P012e-79(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.52e-40TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Chern M, et al.
    A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation.
    Plant Methods, 2012. 8(1): p. 6
    [PMID:22353606]
  4. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]
  5. Chern M, et al.
    A Genetic Screen Identifies a Requirement for Cysteine-Rich-Receptor-Like Kinases in Rice NH1 (OsNPR1)-Mediated Immunity.
    PLoS Genet., 2016. 12(5): p. e1006049
    [PMID:27176732]