PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G361842_P02 | ||||||||
Common Name | CA2P8, cl982_-1b | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NF-YA | ||||||||
Protein Properties | Length: 159aa MW: 17086.2 Da PI: 6.6026 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 39.9 | 1.4e-12 | 89 | 110 | 37 | 58 |
CBFB_NFYA 37 pylheSRhkhAlrRpRgsgGrF 58 pylheSRh+hAl+R+Rg gGrF GRMZM2G361842_P02 89 PYLHESRHQHALKRARGAGGRF 110 8********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02045 | 7.7E-11 | 23 | 110 | IPR001289 | Nuclear transcription factor Y subunit A |
SMART | SM00521 | 6.7E-4 | 62 | 113 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 14.577 | 89 | 113 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MTSVVHSVSG DHRAEDQNQQ KKQAEPGDQQ EAPVTSSDSQ PTVGTPSTDY VAPYAPHDMS 60 HAMGQYAYPN IDPYYGSLYA AAYGGQPLPY LHESRHQHAL KRARGAGGRF LNSKSDDKEE 120 NSDSSHKENQ NGVAPHRSGQ PSTPPSPNGA SSANQGRQS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.27291 | 1e-148 | embryo| meristem| pollen| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G361842 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G361842_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT065764 | 0.0 | BT065764.1 Zea mays full-length cDNA clone ZM_BFc0071M17 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008679161.1 | 1e-113 | uncharacterized protein LOC100284857 isoform X2 | ||||
TrEMBL | C0PBU5 | 1e-111 | C0PBU5_MAIZE; CCAAT-HAP2 transcription factor | ||||
STRING | GRMZM2G361842_P01 | 1e-90 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54160.1 | 1e-09 | nuclear factor Y, subunit A5 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G361842_P02 |
Entrez Gene | 100284857 |
Publications ? help Back to Top | |||
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