PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G356718_P02
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 412aa    MW: 47847.2 Da    PI: 10.0262
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G356718_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12e-0869111347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT +E+e++ +a +q G++ +++I ++++  +   q+ ++++ +
  GRMZM2G356718_P02  69 AWTHQEEEIFFNALRQVGKN-FDKITHRVQ-SKNKDQVSHYYYRL 111
                        6*****************99.*********.99*********976 PP
2Myb_DNA-binding26.12e-08175217347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT +E+e++ +a +q G++ +++I ++++  +   q+ ++++ +
  GRMZM2G356718_P02 175 AWTHQEEEIFFNALRQVGKN-FDKITHRVQ-SKNKDQVSHYYYRL 217
                        6*****************99.*********.99*********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.09E-1062115IPR009057Homeodomain-like
PROSITE profilePS5129312.23865116IPR017884SANT domain
SMARTSM007174.5E-666114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-568114IPR009057Homeodomain-like
CDDcd001672.44E-569112No hitNo description
PfamPF002493.6E-669111IPR001005SANT/Myb domain
SuperFamilySSF466892.2E-10168221IPR009057Homeodomain-like
PROSITE profilePS5129312.238171222IPR017884SANT domain
SMARTSM007174.5E-6172220IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-5174220IPR009057Homeodomain-like
PfamPF002493.6E-6175217IPR001005SANT/Myb domain
CDDcd001672.44E-5175218No hitNo description
PROSITE profilePS5174614.161268412IPR001932PPM-type phosphatase domain
CDDcd001433.93E-20270412No hitNo description
SuperFamilySSF816062.62E-19274412IPR001932PPM-type phosphatase domain
Gene3DG3DSA:3.60.40.103.4E-22289412IPR001932PPM-type phosphatase domain
PfamPF004816.9E-16295412IPR001932PPM-type phosphatase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0009066anatomyanther
PO:0001007developmental stagepollen development stage
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MNFNPRTTSS RRWSKASTRA TSKAPLDVDQ SLRHAQRPRA HHQAREHVLA DLAPHSQEAA  60
KNQTRQWAAW THQEEEIFFN ALRQVGKNFD KITHRVQSKN KDQVSHYYYR LVRRMKKLLG  120
PRFSLDAKNS KDTIAAMLRC YWVYMCTPMS YIGSAPEPSD LNRKPAKNQT RQWAAWTHQE  180
EEIFFNALRQ VGKNFDKITH RVQSKNKDQV SHYYYRLVRR MKKLLGPRFS LDAKNSKDTI  240
AAMLRCLEYW AFEMVVPSGI SFRSNTRKFS FVSQIVSDAM RLFLEDANSP QASHENEIFA  300
KYVEDSVRKA FLHGNLALAD VSVINHSSST TILSFFWYHN TDSIDLWEVR QLLVANAEDY  360
RTVLCRKGIA VDMSKDHRPT YDAEHQRVIE CGGYIEDGYL NGVLSMTRAL GD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1181591e-163ear| embryo| meristem| ovary| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G356718
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G356718_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0622361e-160BT062236.1 Zea mays full-length cDNA clone ZM_BFb0231C15 mRNA, complete cds.
GenBankEU9714021e-160EU971402.1 Zea mays clone 363860 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A317YBG50.0A0A317YBG5_MAIZE; Uncharacterized protein
STRINGGRMZM2G356718_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54783643
Representative plantOGRP21641015
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.12e-39TSL-kinase interacting protein 1