PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G356718_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 309aa    MW: 36150 Da    PI: 9.3009
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G356718_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.61.4e-0872114347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT +E+e++ +a +q G++ +++I ++++  +   q+ ++++ +
  GRMZM2G356718_P01  72 AWTHQEEEIFFNALRQVGKN-FDKITHRVQ-SKNKDQVSHYYYRL 114
                        6*****************99.*********.99*********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.47E-1065118IPR009057Homeodomain-like
PROSITE profilePS5129312.23868119IPR017884SANT domain
SMARTSM007174.5E-669117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-570117IPR009057Homeodomain-like
PfamPF002492.4E-672114IPR001005SANT/Myb domain
CDDcd001671.79E-572115No hitNo description
PROSITE profilePS5174614.161165309IPR001932PPM-type phosphatase domain
CDDcd001431.13E-20167309No hitNo description
SuperFamilySSF816061.31E-19170309IPR001932PPM-type phosphatase domain
Gene3DG3DSA:3.60.40.104.9E-22186309IPR001932PPM-type phosphatase domain
PfamPF004813.7E-16192309IPR001932PPM-type phosphatase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MCWRIWHLTH KKQRTLHNEY NLYYTIRNYR GRQSPSGYWV YMCTPMSYIG SAPEPSDLNR  60
KPAKNQTRQW AAWTHQEEEI FFNALRQVGK NFDKITHRVQ SKNKDQVSHY YYRLVRRMKK  120
LLGPRFSLDA KNSKDTIAAM LRCLEYWAFE MVVPSGISFR SNTRKFSFVS QIVSDAMRLF  180
LEDANSPQAS HENEIFAKYV EDSVRKAFLH GNLALADVSV INHSSSTTIL SFFWYHNTDS  240
IDLWEVRQLL VANAEDYRTV LCRKGIAVDM SKDHRPTYDA EHQRVIECGG YIEDGYLNGV  300
LSMTRALGD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1181591e-163ear| embryo| meristem| ovary| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G356718
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G356718_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0622361e-161BT062236.1 Zea mays full-length cDNA clone ZM_BFb0231C15 mRNA, complete cds.
GenBankEU9714021e-161EU971402.1 Zea mays clone 363860 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A317YBG50.0A0A317YBG5_MAIZE; Uncharacterized protein
STRINGGRMZM2G356718_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.22e-40TSL-kinase interacting protein 1