PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G354618_P01 | ||||||||
Common Name | bHLH85, ZEAMMB73_795844, Zm.2720 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 288aa MW: 31191.9 Da PI: 7.4117 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.2 | 2.9e-08 | 167 | 208 | 8 | 54 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + r RR+ri ++ L++l+P +K++ a++L +A++YIk L GRMZM2G354618_P01 167 VARHRRERISERVRVLQRLVPGG-----TKMDTASMLDEAIRYIKFL 208 5699*****************87.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.90E-11 | 150 | 213 | No hit | No description |
PROSITE profile | PS50888 | 15.11 | 159 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-14 | 164 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.0E-13 | 165 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-13 | 165 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-5 | 168 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MNNITQHNSS SSSSWDLDMS LGTHHHPLLF DSHPNPGPPP PPLPFHPSSS HHPPPHPAHH 60 HPGLGPSLSS SLFPQPPHHH HHRLHRLGLD IDDPSSQSHG HRGNDELEEE MRKQHEAAAE 120 HVDEELGAMK EMMYRIAAMQ PVDIDPATVK KPRRRNVRIS EDPQSVVARH RRERISERVR 180 VLQRLVPGGT KMDTASMLDE AIRYIKFLKR QVQELQHPAP AAAGAGAGPS VSAVGGLPLI 240 DWAGLVRPVD IHGPTSPSSS SSMGGAGAHA ALGFGFSSAG GQSSHGMH |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.2720 | 1e-164 | embryo |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G354618 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G354618_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ726970 | 0.0 | KJ726970.1 Zea mays clone pUT3671 bHLH transcription factor (bHLH85) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020408113.1 | 1e-124 | transcription factor IND | ||||
TrEMBL | K7USL1 | 0.0 | K7USL1_MAIZE; BHLH transcription factor (Fragment) | ||||
STRING | GRMZM2G354618_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9051 | 32 | 46 | Representative plant | OGRP761 | 15 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09750.1 | 2e-40 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G354618_P01 |
Entrez Gene | 103653155 |