PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G354384_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | WRKY | ||||||||
Protein Properties | Length: 171aa MW: 18430.4 Da PI: 10.7403 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 46.3 | 8.3e-15 | 2 | 60 | 2 | 59 |
--SS-EEEEEEE--.TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKev.kgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ + ++ p r ++Cpv+ kv+ +a+d+ v++ +Y g Hnh+ GRMZM2G354384_P01 2 SDGCQWRKYGQKVAaTRARAPTTAARPGAPDCPVRMKVQLCARDTAVLVAMYDGVHNHP 60 8***********86256789**************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 13.689 | 1 | 62 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.3E-8 | 1 | 61 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.18E-11 | 2 | 61 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.7E-13 | 2 | 60 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-10 | 3 | 60 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MSDGCQWRKY GQKVAATRAR APTTAARPGA PDCPVRMKVQ LCARDTAVLV AMYDGVHNHP 60 LTPTPPRRWR RPPYSRRPRH ATRQALLLPP LTALPPAPQR YSFSGAAVAI SGPPTAASSQ 120 YNVVVPMANI MMKAVADPSF RTAVMVAVAS YLGEQCGGRN VDDILTLAPP C |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G354384 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G354384_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008676372.1 | 1e-122 | WRKY transcription factor WRKY28-like | ||||
TrEMBL | A0A1E5VD97 | 2e-47 | A0A1E5VD97_9POAL; Putative WRKY transcription factor 9 | ||||
STRING | GRMZM2G354384_P01 | 1e-120 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14319 | 22 | 26 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18860.1 | 2e-14 | WRKY DNA-binding protein 61 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G354384_P01 |