PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G354151_P01
Common NameZEAMMB73_419887
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 380aa    MW: 42773 Da    PI: 6.0789
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G354151_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.77.6e-5671361129
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                        +ppGfrFhPtdeelv++yL++kv+++k++l +vik+vd+yk+ePwdL++  k+ + e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+d
  GRMZM2G354151_P01   7 VPPGFRFHPTDEELVDYYLRNKVASNKIDL-DVIKDVDLYKIEPWDLQEkcKIGTeEQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRD 97 
                        69****************************.9***************952444443555********************************* PP

                NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                        k++++ k+ lvg++ktLvfy+grap+g+k+dW+mheyrle
  GRMZM2G354151_P01  98 KPIYT-KSCLVGMRKTLVFYRGRAPNGHKSDWIMHEYRLE 136
                        *****.999*****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-575181IPR003441NAC domain
PROSITE profilePS5100557.4967181IPR003441NAC domain
PfamPF023651.8E-288135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MDTFSHVPPG FRFHPTDEEL VDYYLRNKVA SNKIDLDVIK DVDLYKIEPW DLQEKCKIGT  60
EEQNEWYFFS HKDKKYPTGT RTNRATTAGF WKATGRDKPI YTKSCLVGMR KTLVFYRGRA  120
PNGHKSDWIM HEYRLETTEN VTAAPVPDDS ISSCLHVRTW TMHELVVHQE EGWVVCRVFI  180
KKRVEAVRRM ADGAPPWFDG HVPGGFMAPA GLGSPRQLMH HHPNPAAAAP LLYSGQQLYH  240
CKPELEYHHL LQPSQEALLQ QLPQLVESPK PPPPAFIDQG SCSLQSPDEA SGYNTTPQQP  300
PPMTTEAAYM DDDSVTDWRV LDKFVASQLF SHGDGMAKED GYPNPGQALF QAENKQPEEA  360
LDYASTSASG GGGGEANMWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-47618214169Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G354151
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element formation. Expressed preferentially in procambial cells adjacent to root meristem. {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
UniprotTISSUE SPECIFICITY: Expressed in root, shoot and hypocotyl vascular elements, columella root caps, epidermal and cortex root cells and root-hypocotyl junctions. Observed predominantly in root imature xylem vessels (PubMed:18445131). Present in root developing xylems (PubMed:16103214, PubMed:17565617). Specifically expressed in vessels in the secondary xylem of the root-hypocotyl region, and in vessels but not in interfascicular fibers in stems (PubMed:25148240). {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:17565617, ECO:0000269|PubMed:18445131, ECO:0000269|PubMed:25148240}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G354151_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0750930.0KT075093.1 Panicum virgatum secondary wall NAC master switch (SWN8B) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008678872.10.0NAC domain-containing protein 7
RefseqXP_008678873.10.0NAC domain-containing protein 7
RefseqXP_008678874.10.0NAC domain-containing protein 7
RefseqXP_008678877.10.0NAC domain-containing protein 7
SwissprotQ9FWX21e-110NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A194YTG60.0A0A194YTG6_SORBI; Uncharacterized protein
STRINGGRMZM2G354151_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23703892
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.12e-99NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]