PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G353553_P01 | ||||||||
Common Name | LOC100193071 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 397aa MW: 42318 Da PI: 8.2798 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30.1 | 1e-09 | 252 | 310 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr +r NR +A rs +R+ +i+eLe+kv+ L++e ++L +l l+ +a l +++ GRMZM2G353553_P01 252 KRVKRVLANRQSAARSKERRMRYIAELEQKVQILQTEATTLSAQLTLLQRDSAGLATQN 310 999*********************************************99998887766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.7E-16 | 248 | 312 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.691 | 250 | 313 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.13E-10 | 252 | 303 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.0E-10 | 252 | 309 | No hit | No description |
Pfam | PF00170 | 3.3E-9 | 252 | 310 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 5.76E-22 | 253 | 304 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 397 aa Download sequence Send to blast |
MNTTNGHGLM HHHHVQASMA PAQHQKQRPG LPPPAPAPAG AGSHSLHADM CVDDSSAPGR 60 AQALGGLPPR KAHRRSRSDV VPYGYFQPLP PPSPSPKVEA GGWGLASGGG GGAGDDLLNA 120 YMSMEGMDGL NHSDGDSRGS SGMRTNGADS SENESEDYGA GADSQFFLWG DGGKRRRNAS 180 GEPAAPPAAA AAAARHARSH SMDSLMGKLS FSANGEPGKF SLDFGGGEFT PAEMKRIMAD 240 EKLAEMALAD PKRVKRVLAN RQSAARSKER RMRYIAELEQ KVQILQTEAT TLSAQLTLLQ 300 RDSAGLATQN NELKFRLQAM EQQAQLRDAL NEALTGEVQR LKLGDTASSG NNLPQQVQLR 360 CQNQVAGLHK QQQQQGGEQI PFYQLEQNGA PRNDAPK |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.17645 | 0.0 | ovary |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G353553 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G353553_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT035229 | 0.0 | BT035229.1 Zea mays full-length cDNA clone ZM_BFb0046N14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001131709.1 | 0.0 | uncharacterized protein LOC100193071 | ||||
TrEMBL | B4FDP1 | 0.0 | B4FDP1_MAIZE; Basic-leucine zipper (BZIP) transcription factor family protein | ||||
TrEMBL | K4JFG3 | 0.0 | K4JFG3_MAIZE; BZIP-type transcription factor (Fragment) | ||||
STRING | GRMZM2G353553_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3536 | 35 | 76 | Representative plant | OGRP126 | 17 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38900.3 | 5e-60 | bZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G353553_P01 |
Entrez Gene | 100193071 |