PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G352159_P05
Common NameLOC100273544
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 771aa    MW: 85129.1 Da    PI: 6.2893
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G352159_P05genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.25.6e-22137233194
                        EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                        f+k+lt sd++++g +++ +++a+e+     +++++ +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F +  +
  GRMZM2G352159_P05 137 FCKTLTASDTSTHGGFSVLRRHADEClppldMSQHPPNQELVAKDLHGAEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFLR--T 226
                        99*****************************555555669***********************************************94..3 PP

                        SEE..EE CS
                 B3  88 sefelvv 94 
                        s +e+vv
  GRMZM2G352159_P05 227 SPAEFVV 233
                        5555555 PP
2Auxin_resp81.32.2e-272252901883
         Auxin_resp  18 rastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        r+s++eFvv+++++ ++lk+++s+GmRfkm+fe+e+++e+r++Gt+vg+ ++dp+ W +SkWrsLk
  GRMZM2G352159_P05 225 RTSPAEFVVSRDRYYESLKRNYSIGMRFKMRFEGEEAAEQRFTGTIVGIGASDPSGWADSKWRSLK 290
                        789*************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.45E-35131238IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-35133235IPR015300DNA-binding pseudobarrel domain
CDDcd100173.90E-19135234No hitNo description
SMARTSM010192.3E-19137236IPR003340B3 DNA binding domain
PROSITE profilePS5086310.842137239IPR003340B3 DNA binding domain
PfamPF023624.5E-20137233IPR003340B3 DNA binding domain
PfamPF065074.7E-24225290IPR010525Auxin response factor
PROSITE profilePS5174522.936643727IPR000270PB1 domain
SuperFamilySSF542771.83E-10646719No hitNo description
PfamPF023092.4E-6691727IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 771 aa     Download sequence    Send to blast
MAAAACAGAE AGRGCGGKDA LFVELWKACA GPLSCVPPLG EKVYYLPQGH IEQVEASTNQ  60
LAEQQGTPLY NLPWKIPCKL MNIELKVEPD TDEVYAQLTL LPDKKQDENT STTVEEEEVV  120
VPPALPATNE GPHIHSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMSQ HPPNQELVAK  180
DLHGAEWRFR HIFRGQPRRH LLQSGWSVFV SAKRLVAGDA FIFLRTSPAE FVVSRDRYYE  240
SLKRNYSIGM RFKMRFEGEE AAEQRFTGTI VGIGASDPSG WADSKWRSLK VRWDEPSSIS  300
RPERVSPWQI EPSVSPCHVN PLPVRFKRSR SSVNALPSDV STVTREVMAD SQQNSLTRAL  360
HNQGRTQLTV RYHDNSDVKT TQDLTVWSSG TEQQRNNIAA QTKLCLEGWT PTRSPEGYNQ  420
IFSAFKPLKD IHNPLGPFPS QISGTHSNSW DTADARYPVQ QANYSMLPGT WSLRPHNSGF  480
RMNQQNYLVM PEGANFTGKS AFTSLQDHGT DKCSTGCFGH IESSSHTDHA SSSLIRPQPL  540
VLGNGVQKSK GTSFKLFGIP LGSPEKSEPL VSPPSVAYDG KLQTSPSEKG NQLDVVEVDN  600
CSHPSKTVKP LDGPQSDSIT ENNQPSPEAT LNIQNKVQSS STRSCKKVHK QGSALGRSID  660
LTKFACYDEL IAELDQMFDF DGELKSPCKS WLVVYTDNEG DIMLVGDDPW NEFCDMVHKI  720
FIYTREEVER MNPGALNSRS EDSLSDSLGR GVASRDPRGG GSTSALDSEN C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1191931217354Auxin response factor 1
4ldw_A1e-1191931217354Auxin response factor 1
4ldw_B1e-1191931217354Auxin response factor 1
4ldy_A1e-1191931217354Auxin response factor 1
4ldy_B1e-1191931217354Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.947400.0ear| embryo| endosperm| meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G352159
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G352159_P05
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0670080.0BT067008.1 Zea mays full-length cDNA clone ZM_BFb0145N21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020405166.10.0uncharacterized protein LOC100273544 isoform X3
SwissprotQ2QQX60.0ARFX_ORYSJ; Auxin response factor 24
TrEMBLC0PDF90.0C0PDF9_MAIZE; Auxin response factor
STRINGGRMZM2G352159_P040.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li G, et al.
    Rice actin-binding protein RMD is a key link in the auxin-actin regulatory loop that controls cell growth.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(28): p. 10377-82
    [PMID:24982173]