PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G352159_P04 | ||||||||
Common Name | LOC100273544 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ARF | ||||||||
Protein Properties | Length: 777aa MW: 85704.8 Da PI: 6.3629 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 69.2 | 5.7e-22 | 139 | 235 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++ +++a+e+ +++++ +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F + + GRMZM2G352159_P04 139 FCKTLTASDTSTHGGFSVLRRHADEClppldMSQHPPNQELVAKDLHGAEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFLR--T 228 99*****************************555555669***********************************************94..3 PP SEE..EE CS B3 88 sefelvv 94 s +e+vv GRMZM2G352159_P04 229 SPAEFVV 235 5555555 PP | |||||||
2 | Auxin_resp | 81.3 | 2.2e-27 | 227 | 292 | 18 | 83 |
Auxin_resp 18 rastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 r+s++eFvv+++++ ++lk+++s+GmRfkm+fe+e+++e+r++Gt+vg+ ++dp+ W +SkWrsLk GRMZM2G352159_P04 227 RTSPAEFVVSRDRYYESLKRNYSIGMRFKMRFEGEEAAEQRFTGTIVGIGASDPSGWADSKWRSLK 292 789*************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.45E-35 | 133 | 240 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-35 | 135 | 237 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.95E-19 | 137 | 236 | No hit | No description |
PROSITE profile | PS50863 | 10.842 | 139 | 241 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.3E-19 | 139 | 238 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.6E-20 | 139 | 235 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.8E-24 | 227 | 292 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 22.936 | 649 | 733 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.83E-10 | 652 | 725 | No hit | No description |
Pfam | PF02309 | 2.4E-6 | 697 | 733 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 777 aa Download sequence Send to blast |
MAAAACAGGC AEAGRGCGGK DALFVELWKA CAGPLSCVPP LGEKVYYLPQ GHIEQVEAST 60 NQLAEQQGTP LYNLPWKIPC KLMNIELKVE PDTDEVYAQL TLLPDKKQDE NTSTTVEEEE 120 VVVPPALPAT NEGPHIHSFC KTLTASDTST HGGFSVLRRH ADECLPPLDM SQHPPNQELV 180 AKDLHGAEWR FRHIFRGQPR RHLLQSGWSV FVSAKRLVAG DAFIFLRTSP AEFVVSRDRY 240 YESLKRNYSI GMRFKMRFEG EEAAEQRFTG TIVGIGASDP SGWADSKWRS LKVRWDEPSS 300 ISRPERVSPW QIEPSVSPCH VNPLPVRFKR SRSSVNALPS DVSTVTREVT SKVMADSQQN 360 SLTRALHNQG RTQLTVRYHD NSDVKTTQDL TVWSSGTEQQ RNNIAAQTKL CLEGWTPTRS 420 PEGYNQIFSA FKPLKDIHNP LGPFPSQISG THSNSWDTAD ARYPVQQANY SMLPGTWSLR 480 PHNSGFRMNQ QNYLVMPEGA NFTGKSAFTS LQDHGTDKCS TGCFGHIESS SHTDHASSSL 540 IRPQPLVLGN GVQKSKGTSF KLFGIPLGSP EKSEPLVSPP SVAYDGKLQT SPSEKGNQLD 600 VVEVDNCSHP SKTVKPLDGP QSDSITENNQ PSPEATLNIQ NKVQSSSTRS CKKVHKQGSA 660 LGRSIDLTKF ACYDELIAEL DQMFDFDGEL KSPCKSWLVV YTDNEGDIML VGDDPWNEFC 720 DMVHKIFIYT REEVERMNPG ALNSRSEDSL SDSLGRGVAS RDPRGGGSTS ALDSENC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-119 | 21 | 314 | 17 | 354 | Auxin response factor 1 |
4ldy_B | 1e-119 | 21 | 314 | 17 | 354 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.94740 | 0.0 | ear| embryo| endosperm| meristem| ovary |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G352159 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G352159_P04 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT067008 | 0.0 | BT067008.1 Zea mays full-length cDNA clone ZM_BFb0145N21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020405166.1 | 0.0 | uncharacterized protein LOC100273544 isoform X3 | ||||
Swissprot | Q2QQX6 | 0.0 | ARFX_ORYSJ; Auxin response factor 24 | ||||
TrEMBL | C0PDF9 | 0.0 | C0PDF9_MAIZE; Auxin response factor | ||||
STRING | GRMZM2G352159_P04 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1178 | 36 | 111 | Representative plant | OGRP550 | 15 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G352159_P04 |
Publications ? help Back to Top | |||
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