PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G352159_P03
Common NameARF8, LOC100273544
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 750aa    MW: 83276.9 Da    PI: 6.7449
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G352159_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.75.3e-2457158199
                        EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                        f+k+lt sd++++g +++ +++a+e+     +++++ +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F   + 
  GRMZM2G352159_P03  57 FCKTLTASDTSTHGGFSVLRRHADEClppldMSQHPPNQELVAKDLHGAEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFL--RG 146
                        99*****************************555555669************************************************..44 PP

                        SEE..EEEEE-S CS
                 B3  88 sefelvvkvfrk 99 
                        +++el+v+v+r+
  GRMZM2G352159_P03 147 ENGELRVGVRRA 158
                        9999*****985 PP
2Auxin_resp110.81.3e-36183265183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        a+ha++t s+F+v+Y+Pr+s++eFvv+++++ ++lk+++s+GmRfkm+fe+e+++e+r++Gt+vg+ ++dp+ W +SkWrsLk
  GRMZM2G352159_P03 183 AWHAVNTDSMFTVYYKPRTSPAEFVVSRDRYYESLKRNYSIGMRFKMRFEGEEAAEQRFTGTIVGIGASDPSGWADSKWRSLK 265
                        89*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-4151186IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-4053172IPR015300DNA-binding pseudobarrel domain
CDDcd100171.93E-2155157No hitNo description
PROSITE profilePS5086311.77357159IPR003340B3 DNA binding domain
SMARTSM010198.9E-2357159IPR003340B3 DNA binding domain
PfamPF023628.2E-2257158IPR003340B3 DNA binding domain
PfamPF065071.2E-33183265IPR010525Auxin response factor
PROSITE profilePS5174522.936622706IPR000270PB1 domain
SuperFamilySSF542771.77E-10625698No hitNo description
PfamPF023092.3E-6670706IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MNIELKVEPD TDEVYAQLTL LPDKKQDENT STTVEEEEVV VPPALPATNE GPHIHSFCKT  60
LTASDTSTHG GFSVLRRHAD ECLPPLDMSQ HPPNQELVAK DLHGAEWRFR HIFRGQPRRH  120
LLQSGWSVFV SAKRLVAGDA FIFLRGENGE LRVGVRRALR HQTTIPSSVI SSHNMHLGVL  180
ATAWHAVNTD SMFTVYYKPR TSPAEFVVSR DRYYESLKRN YSIGMRFKMR FEGEEAAEQR  240
FTGTIVGIGA SDPSGWADSK WRSLKVRWDE PSSISRPERV SPWQIEPSVS PCHVNPLPVR  300
FKRSRSSVNA LPSDVSTVTR EVTSKVMADS QQNSLTRALH NQGRTQLTVR YHDNSDVKTT  360
QDLTVWSSGT EQQRNNIAAQ TKLCLEGWTP TRSPEGYNQI FSAFKPLKDI HNPLGPFPSQ  420
ISGTHSNSWD TADARYPVQQ ANYSMLPGTW SLRPHNSGFR MNQQNYLVMP EGANFTGKSA  480
FTSLQDHGTD KCSTGCFGHI ESSSHTDHAS SSLIRPQPLV LGNGVQKSKG TSFKLFGIPL  540
GSPEKSEPLV SPPSVAYDGK LQTSPSEKGN QLDVVEVDNC SHPSKTVKPL DGPQSDSITE  600
NNQPSPEATL NIQNKVQSSS TRSCKKVHKQ GSALGRSIDL TKFACYDELI AELDQMFDFD  660
GELKSPCKSW LVVYTDNEGD IMLVGDDPWN EFCDMVHKIF IYTREEVERM NPGALNSRSE  720
DSLSDSLGRG VASRDPRGGG STSALDSENC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-138128778354Auxin response factor 1
4ldw_A1e-138128778354Auxin response factor 1
4ldw_B1e-138128778354Auxin response factor 1
4ldx_A1e-138128778354Auxin response factor 1
4ldx_B1e-138128778354Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.947400.0ear| embryo| endosperm| meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G352159
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G352159_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0670080.0BT067008.1 Zea mays full-length cDNA clone ZM_BFb0145N21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001307013.10.0uncharacterized protein LOC100273544
SwissprotQ2QQX60.0ARFX_ORYSJ; Auxin response factor 24
TrEMBLA0A060CYB40.0A0A060CYB4_MAIZE; Auxin response factor (Fragment)
STRINGSb08g014320.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li G, et al.
    Rice actin-binding protein RMD is a key link in the auxin-actin regulatory loop that controls cell growth.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(28): p. 10377-82
    [PMID:24982173]