PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G352159_P02
Common NameLOC100273544
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 707aa    MW: 78004.5 Da    PI: 7.9017
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G352159_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.84.8e-24137238199
                        EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                        f+k+lt sd++++g +++ +++a+e+     +++++ +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F   + 
  GRMZM2G352159_P02 137 FCKTLTASDTSTHGGFSVLRRHADEClppldMSQHPPNQELVAKDLHGAEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFL--RG 226
                        99*****************************555555669************************************************..44 PP

                        SEE..EEEEE-S CS
                 B3  88 sefelvvkvfrk 99 
                        +++el+v+v+r+
  GRMZM2G352159_P02 227 ENGELRVGVRRA 238
                        9999*****985 PP
2Auxin_resp110.91.2e-36263345183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        a+ha++t s+F+v+Y+Pr+s++eFvv+++++ ++lk+++s+GmRfkm+fe+e+++e+r++Gt+vg+ ++dp+ W +SkWrsLk
  GRMZM2G352159_P02 263 AWHAVNTDSMFTVYYKPRTSPAEFVVSRDRYYESLKRNYSIGMRFKMRFEGEEAAEQRFTGTIVGIGASDPSGWADSKWRSLK 345
                        89*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-41131266IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-40133252IPR015300DNA-binding pseudobarrel domain
CDDcd100171.70E-21135237No hitNo description
SMARTSM010198.9E-23137239IPR003340B3 DNA binding domain
PfamPF023627.5E-22137238IPR003340B3 DNA binding domain
PROSITE profilePS5086311.773137239IPR003340B3 DNA binding domain
PfamPF065071.1E-33263345IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MAAAACAGAE AGRGCGGKDA LFVELWKACA GPLSCVPPLG EKVYYLPQGH IEQVEASTNQ  60
LAEQQGTPLY NLPWKIPCKL MNIELKVEPD TDEVYAQLTL LPDKKQDENT STTVEEEEVV  120
VPPALPATNE GPHIHSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMSQ HPPNQELVAK  180
DLHGAEWRFR HIFRGQPRRH LLQSGWSVFV SAKRLVAGDA FIFLRGENGE LRVGVRRALR  240
HQTTIPSSVI SSHNMHLGVL ATAWHAVNTD SMFTVYYKPR TSPAEFVVSR DRYYESLKRN  300
YSIGMRFKMR FEGEEAAEQR FTGTIVGIGA SDPSGWADSK WRSLKVRWDE PSSISRPERV  360
SPWQIEPSVS PCHVNPLPVR FKRSRSSVNA LPSDVSTVTR EVTSKVMADS QQNSLTRALH  420
NQGRTQLTVR YHDNSDVKTT QDLTVWSSGT EQQRNNIAAQ TKLCLEGWTP TRSPEGYNQI  480
FSAFKPLKDI HNPLGPFPSQ ISGTHSNSWD TADARYPVQQ ANYSMLPGTW SLRPHNSGFR  540
MNQQNYLVMP EGANFTGKSA FTSLQDHGTD KCSTGCFGHI ESSSHTDHAS SSLIRPQPLV  600
LGNGVQKSKG TSFKLFGIPL GSPEKSEPLV SPPSVAYDGK LQTSPSEKGN QLDVVEVDNC  660
SHPSKTVKPL DGPQSDSITE NNQPSPEATL NIQNKVQSSS TRSCKKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1681936717354Auxin response factor 1
4ldw_A1e-1681936717354Auxin response factor 1
4ldw_B1e-1681936717354Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.947400.0ear| embryo| endosperm| meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G352159
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G352159_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0670080.0BT067008.1 Zea mays full-length cDNA clone ZM_BFb0145N21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001307013.10.0uncharacterized protein LOC100273544
SwissprotQ2QQX60.0ARFX_ORYSJ; Auxin response factor 24
TrEMBLC0PFD90.0C0PFD9_MAIZE; Auxin response factor
STRINGGRMZM2G352159_P040.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li G, et al.
    Rice actin-binding protein RMD is a key link in the auxin-actin regulatory loop that controls cell growth.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(28): p. 10377-82
    [PMID:24982173]