PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G350165_P01
Common NamebHLH88, LOC100274099
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 470aa    MW: 47463.2 Da    PI: 6.9399
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G350165_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376e-12250295555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h+++Er RR+ri +++  L+el+P+a      K +Ka++L + v+Y+k Lq
  GRMZM2G350165_P01 250 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIVDYVKFLQ 295
                        99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.24E-13243299No hitNo description
SuperFamilySSF474598.51E-17243305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.301245294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-16247304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-9250295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-13251300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MQPTTREMQA MAAAGQQISL DDLRAAAGGV HDDFLDQMLG GLPPSAWPEL SSAAGGKAPD  60
GGAQAEQMQH QPQHLGGGGG LYDDSALLAS RLRQHQISGG GGGEAVKQMV LQQLADLRQE  120
HHVLLQGMGR STSTGGSRDG GLLLPLSLGS GGSGGDVQAL LKAVADSAGG EAAGVFGGSF  180
AGSLHHHQQQ QQHFQSHPQQ TAPLPGQGFG GGAGASGGVS QPQAGAACGG AAAPPRQRVR  240
ARRGQATDPH SIAERLRRER IAERMKALQE LVPNANKTDK ASMLDEIVDY VKFLQLQVKV  300
LSMSRLGGAA AVAPLVADMS SEGRGGVAVA AGSDDGLAVT EQQVAKLMEE DMGTAMQYLQ  360
GKGLCLMPVS LASAISSATC HMRPPVGGPG LGVAAAAAHH MAAMRLPPHA MNGGAGAGAD  420
AVPASPSMSV LTAQSAMAPN GAGGGTDGEG SHSQQQQRHH PKDAASVSKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1254259RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.295850.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G350165
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G350165_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0620760.0BT062076.1 Zea mays full-length cDNA clone ZM_BFb0212P11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141950.10.0uncharacterized LOC100274099
SwissprotQ9ZUG91e-77BH066_ARATH; Transcription factor bHLH66
TrEMBLC0HIC00.0C0HIC0_MAIZE; BHLH transcription factor
STRINGGRMZM2G350165_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.13e-44LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]