PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G348307_P01
Common NameZEAMMB73_477738
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 396aa    MW: 44920 Da    PI: 8.9797
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G348307_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.86.2e-09901241855
                AP2  18 eIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +Ir+p   +kr+r +lg+f taeeAa a+++ +++l+g
  GRMZM2G348307_P01  90 QIREP---NKRTRLWLGSFATAEEAALAYDEVARRLYG 124
                        57777...347************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.18274132IPR001471AP2/ERF domain
SMARTSM003805.9E-1287138IPR001471AP2/ERF domain
CDDcd000181.24E-1690134No hitNo description
Gene3DG3DSA:3.30.730.105.8E-1690133IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-1090133IPR016177DNA-binding domain
PfamPF039145.5E-6282326IPR005612CCAAT-binding factor
PfamPF061025.0E-7327381IPR009292rRNA biogenesis protein RRP36
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000469Biological Processcleavage involved in rRNA processing
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MKTKTVSSDT TFFRGCWIAF SGNQEREANK EMVATLSTPR PKCSPLPPPR FVWLLSHSNA  60
ANREEFRIGR CCLHLKPSVP QPDSDIGDPQ IREPNKRTRL WLGSFATAEE AALAYDEVAR  120
RLYGPDAFLN LPHLCASAVS SVAAHQRLRW LAASARGTAA VPAYDLLNLN AQHNVYNLLA  180
HVPLMDFQKE STFDMLSTVG LNSVLTLDFW FCTSDEGLSS KGENDSFKFT KAWLSFLMLP  240
LPLDVYKEVL ALIHQNVIPS MSNPSILCDF LTRSYDIGGV ISVMALSGLF ILMTQHGLEY  300
RKFYEKLYAL LTPAVFMAKH RSVFLQDKQL KSHPPKNVES KILCEHIKKE REVAKARKRP  360
YYLKKSELHE RKLMNKYNEL KLYDSAIEFG ILSIDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wlc_SU2e-17223333248374Noc4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.539951e-146cell culture| ear| embryo| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G348307
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G348307_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0834801e-143BT083480.1 Zea mays full-length cDNA clone ZM_BFb0002D11 mRNA, complete cds.
GenBankEU9572371e-143EU957237.1 Zea mays clone 1586608 nucleolar complex protein 4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008680331.11e-103dehydration-responsive element-binding protein 2E-like
TrEMBLA0A1D6LYK91e-173A0A1D6LYK9_MAIZE; Putative AP2/EREBP transcription factor superfamily protein
STRINGGRMZM2G348307_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.19e-25ERF family protein