PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G347043_P01
Common NameNAC49, SNAC1
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 312aa    MW: 34841.3 Da    PI: 6.7249
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G347043_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.54.6e-52171421128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtd+elv +yL++k++g++l++  +i+evd+y+++PwdLp+++  + +ewyfF++rd+ky++g+r+nra+ +gyWkatg dk+v
  GRMZM2G347043_P01  17 LPPGFRFHPTDDELVEHYLCRKAAGQRLPV-PIIAEVDLYRFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPV 107
                        79****************************.88***************8777899************************************* PP

                NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           +g++ g+kk Lvfy g+ap+g+ktdW+mheyrl
  GRMZM2G347043_P01 108 AP-RGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRL 142
                        99.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-6412169IPR003441NAC domain
PROSITE profilePS5100560.39517169IPR003441NAC domain
PfamPF023653.1E-2718142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MGLPMRRERD AEAELNLPPG FRFHPTDDEL VEHYLCRKAA GQRLPVPIIA EVDLYRFDPW  60
DLPERALFGA REWYFFTPRD RKYPNGSRPN RAAGNGYWKA TGADKPVAPR GRTLGIKKAL  120
VFYAGKAPRG VKTDWIMHEY RLADAGRAAA AKKGSLRLDD WVLCRLYNKK NEWEKMQLGK  180
TAVAGVGATK EEAMDMATSH THSHSQSHSH SWGETRTPES EIVDNDPFPE LDSFPAFQDP  240
AMMMTVPKEE QVDGCSAKSG NLFVDLSYDD IQGMYSGLDM LPPPGEDFYS SLFASPRVKG  300
NQPAGAAGLG QF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-11251753174Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.822980.0ear| leaf| meristem| ovary| pericarp| pollen
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G347043
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and stamens. {ECO:0000269|PubMed:16924117}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that possesses transactivation activity (PubMed:16924117, PubMed:20632034). Transcription activator involved in response to abiotic stresses. Plays a positive role during dehydration and salt stress. Binds specifically to the 5'-CATGTG-3' motif found in promoters of stress-responsive genes (PubMed:16924117). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}.
Function -- GeneRIF ? help Back to Top
  1. ZmSNAC1 functions as a stress-responsive transcription factor in positive modulation of abiotic stress tolerance.
    [PMID: 22610487]
  2. ZmNAC1 played a significant role in lateral root development.
    [PMID: 23171309]
  3. ZmSNAC1 is a substrate of ZmOST1
    [PMID: 23469147]
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G347043_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stresss, salt stress and cold stress (PubMed:16924117, PubMed:20632034). Induced by abscisic acid (ABA) (PubMed:16924117). Induced by methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9634060.0EU963406.1 Zea mays clone 261978 NAC domain-containing protein 67 mRNA, complete cds.
GenBankJQ2174290.0JQ217429.1 Zea mays SNAC1 (SNAC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001123932.10.0uncharacterized protein LOC100170665
SwissprotQ75HE51e-169NAC2_ORYSJ; NAC domain-containing protein 2
TrEMBLA0A317Y3970.0A0A317Y397_MAIZE; NAC domain-containing protein 67
TrEMBLB5A4B40.0B5A4B4_MAIZE; NAC domain-containing protein 67
STRINGGRMZM2G347043_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44143071
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.11e-78NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  3. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  4. Chen Q,Wang Q,Xiong L,Lou Z
    A structural view of the conserved domain of rice stress-responsive NAC1.
    Protein Cell, 2011. 2(1): p. 55-63
    [PMID:21337010]
  5. Lu M, et al.
    A maize stress-responsive NAC transcription factor, ZmSNAC1, confers enhanced tolerance to dehydration in transgenic Arabidopsis.
    Plant Cell Rep., 2012. 31(9): p. 1701-11
    [PMID:22610487]
  6. Li J, et al.
    miRNA164-directed cleavage of ZmNAC1 confers lateral root development in maize (Zea mays L.).
    BMC Plant Biol., 2012. 12: p. 220
    [PMID:23171309]
  7. Vilela B, et al.
    The maize OST1 kinase homolog phosphorylates and regulates the maize SNAC1-type transcription factor.
    PLoS ONE, 2013. 8(2): p. e58105
    [PMID:23469147]