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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G346706_P01 |
Common Name | GRAS6, ZEAMMB73_496542 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
GRAS |
Protein Properties |
Length: 627aa MW: 70612.1 Da PI: 7.267 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G346706_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 363.2 | 3.8e-111 | 253 | 623 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93
+ lL++cA+a+ss+++ a++lL+++++++sp+gd qRla yf+ AL+ar a+++s++ + l +++ts +++ l+a++l ++P+ ++
GRMZM2G346706_P01 253 RGLLIQCAQAISSNNHPFASELLKKIRHHSSPYGDGSQRLAVYFADALEARAAGTGSQINQRLVVKRTS---VTDMLKAYRLSIAACPFGRV 341
679****************************************************************99...9******************* PP
GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183
++ aN++I++ + + rvHiiDf+i+ G+QWp+L+q La+R++gpp+lRiTg++ pe+g +++eetg+rLa++A+ ++vpf+++ va
GRMZM2G346706_P01 342 AYYFANKTIVDVLGSRPRVHIIDFGIMFGFQWPSLIQRLAKREGGPPQLRITGIDVPETGfrPCKQIEETGKRLAEYARMFNVPFQYQS-VA 432
**********************************************************999999*************************.7* PP
GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eak 274
+r+e++ + +L++ ++E+l+Vn+ +++++l de+ +++s+rd+vL+++k+++P+v++ + h+s+ Fl rf eal +ys+ fd+l ++
GRMZM2G346706_P01 433 SRWESIYIADLNIGRDEVLIVNCLHKMKNLGDETEDIDSARDRVLRIMKRMNPDVLITGVMNGLHSSPFFLPRFREALFFYSSQFDMLnSTV 524
****************************************************************************************7777 PP
GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
+++++e+ri++Er llg ++ nvvacegaer+er e++++W++r+ +aGFk++p+++++ k + +++d + ++e+sg+l++gWk+r
GRMZM2G346706_P01 525 VHQNHEARIMIERDLLGADVFNVVACEGAERIERPESYKQWQARILKAGFKKLPVDQTILKGSVDRKELYHGD-FVIDEDSGWLLQGWKGRI 615
78888******************************************************************88.****************** PP
GRAS 367 LvsvSaWr 374
+ ++S+W+
GRMZM2G346706_P01 616 MHALSSWK 623
*******8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
Protein Sequence Length: 627 aa
Download sequence Send
to blast |
MDNLEYCEIN SDITLNYITQ ILMEESADEN ISAYKHHDAL QAMEKPFYDI LGKAYPSSSK 60 QTMVNSGSQS GLPDDINNSH HDLERSGNSV SDLLRGRKGV RSIGIDGGSE LCDVALQFNR 120 IAEEAKKFVP SIGNLVVDPE SNDLSSSKEA NGSAIGQHSN QTNKIRSYPH VDLKLVEGRN 180 SKYSAISTSE IIRNELFDRV LLSDEQYLCD VAHLREMAKE ANINLQYVQN TGSAQGKQKP 240 QSKKQEKEAV DLRGLLIQCA QAISSNNHPF ASELLKKIRH HSSPYGDGSQ RLAVYFADAL 300 EARAAGTGSQ INQRLVVKRT SVTDMLKAYR LSIAACPFGR VAYYFANKTI VDVLGSRPRV 360 HIIDFGIMFG FQWPSLIQRL AKREGGPPQL RITGIDVPET GFRPCKQIEE TGKRLAEYAR 420 MFNVPFQYQS VASRWESIYI ADLNIGRDEV LIVNCLHKMK NLGDETEDID SARDRVLRIM 480 KRMNPDVLIT GVMNGLHSSP FFLPRFREAL FFYSSQFDML NSTVVHQNHE ARIMIERDLL 540 GADVFNVVAC EGAERIERPE SYKQWQARIL KAGFKKLPVD QTILKGSVDR KELYHGDFVI 600 DEDSGWLLQG WKGRIMHALS SWKPKDS
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ728016 | 0.0 | KJ728016.1 Zea mays clone pUT6152 GRAS transcription factor (GRAS6) gene, partial cds. |