PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G344974_P01 | ||||||||
Common Name | LOC103627902, Zm.130977 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 184aa MW: 19549.4 Da PI: 6.3464 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15 | 7.4e-05 | 54 | 76 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C + F++ L H+++H GRMZM2G344974_P01 54 YKCTFCRRGFPTAQALGGHMNVH 76 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.46E-6 | 51 | 80 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.4E-4 | 52 | 78 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 6.2E-6 | 54 | 78 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.533 | 54 | 81 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0061 | 54 | 76 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 56 | 76 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MELGLTVDRK KDDEGAPRAS SSSSPSCEAD DDDLPKKQQQ RPSGDDDEGT RQPYKCTFCR 60 RGFPTAQALG GHMNVHRRHR GRPAAVSTGA AAGSSAASVY DYDQPCSTTT TPVLAFARQA 120 TTTQRRPHEL PLFVARGDCC AAGRGSTGTA AGDDVPQDHR YYLPKNGDGG EELDLELRLG 180 GAGP |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G344974 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G344974_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU971833 | 0.0 | EU971833.1 Zea mays clone 371263 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020394338.1 | 1e-132 | uncharacterized protein LOC103627902 | ||||
TrEMBL | A0A1D6HPU4 | 1e-130 | A0A1D6HPU4_MAIZE; Uncharacterized protein | ||||
TrEMBL | A0A3L6ETU4 | 1e-130 | A0A3L6ETU4_MAIZE; Zinc finger protein 10 | ||||
STRING | GRMZM2G344974_P01 | 1e-131 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14547 | 22 | 24 | Representative plant | OGRP1998 | 11 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 1e-11 | zinc-finger protein 10 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G344974_P01 |
Entrez Gene | 103627902 |