PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G344521_P02
Common NameLOC103643733, Zm.62160
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 798aa    MW: 89319.7 Da    PI: 8.9049
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G344521_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.51.8e-115165971596
                        -EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
                 B3  15 rlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                        +l + k++a +h  +k  ++ +tle+  ++++W  k+  r  s++ +l + W +Fv++n+++egD+++F  +++  + +++v +
  GRMZM2G344521_P02 516 LLGITKEYAIAHFPDK--TTNVTLETpGKSKKWHPKFYKRDESRKNLLMGQWLDFVRDNHVQEGDICLFLPTKDeIRHTFMVYI 597
                        578999***9997564..457*****5566*******6688888899999*******************977664555556655 PP
2B346.94.9e-157287953199
                        .--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                 B3  31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                        ++++  +l + +g++We k+ + +++++ +l +GW +F++ ngL++gD+++F+l+++ s+ ++ v+++rk
  GRMZM2G344521_P02 728 TKGQN-ILLQCKGKTWEAKMMFHNGRRW-FLNGGWPDFARGNGLRVGDMCLFELKKKkSTLTMAVHIIRK 795
                        33333.456679********98888877.6999**********************888*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.101.1E-7254IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579033.32E-7356IPR011011Zinc finger, FYVE/PHD-type
PROSITE patternPS013590550IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:2.40.330.103.3E-17493599IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-16494599IPR015300DNA-binding pseudobarrel domain
CDDcd100179.59E-17501598No hitNo description
SMARTSM010190.003501601IPR003340B3 DNA binding domain
PROSITE profilePS5086310.828502601IPR003340B3 DNA binding domain
PfamPF023627.0E-10517597IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-20690795IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-18691795IPR015300DNA-binding pseudobarrel domain
CDDcd100177.55E-19696794No hitNo description
SMARTSM010191.1E-6698796IPR003340B3 DNA binding domain
PfamPF023622.8E-13716795IPR003340B3 DNA binding domain
PROSITE profilePS5086312.605733796IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0004006anatomymesophyll cell
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0025589anatomyleaf lamina tip
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 798 aa     Download sequence    Send to blast
MNTVCEVCGD IGYRQLLLCC RDCKRCAVHQ YCLDKVVYEA SLIKWFCYEC LQRRGEVTRI  60
SSLEKLSSER PLSQVHSRSP VQQLITKSVE SVRDAGPWRD RKNESIATKY PSLNRTYPSI  120
KKHTKKKPIV KPMGNCTNRK VRMAKVTTHT SAEASRSCET IGTESSKSNH GKNQQVDHAN  180
PVALNTEQSF PLIVNSLGTL GDNHQYHLLE TTEGLACKFK KVPQSLAAPL KRLEKRDNVV  240
LGSNNLGSSC FTADLGSSVL GKSGDKSNRM KDIGANLSSK HNDHGNQANQ HTLVGSKNME  300
GKSVKAKHTV VDAHKNTSWT VDSLINVKDK SEVYGDSNRD ILNDVTVQLD HRASNELLPR  360
STATNIPQLA TLENDVVDTV MPYSPNGGCE ESFSCPGIKN TPSVRERSVD PINISSDSHD  420
TIEASESSER FMECQKASLC RRRKTVKMAM VSSSSEESGE DTISENVSLG YVLACRSSLS  480
KAQKKRVTKL IQEIQPEFTV FISIMRMSNV KLPGPLLGIT KEYAIAHFPD KTTNVTLETP  540
GKSKKWHPKF YKRDESRKNL LMGQWLDFVR DNHVQEGDIC LFLPTKDEIR HTFMVYILHE  600
TTHSRCGAGF QRVGPCLGGA SSAKMASEVH IEDEPTAGEH VSSDSDMPEN SHEPLESGDS  660
DDPFEPPYFV PCRSPLSKSQ KRMVEQRVRA IRSEVPICVA VMKNNNVGIA QRWMLELCSR  720
YASVYLPTKG QNILLQCKGK TWEAKMMFHN GRRWFLNGGW PDFARGNGLR VGDMCLFELK  780
KKKSTLTMAV HIIRKEQF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.621600.0embryo| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G344521
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G344521_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008665132.10.0uncharacterized protein LOC103643733 isoform X2
TrEMBLA0A1D6KXR40.0A0A1D6KXR4_MAIZE; B3 domain-containing protein
TrEMBLA0A317Y5E70.0A0A317Y5E7_MAIZE; B3 domain-containing protein
STRINGGRMZM2G344521_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Representative plantOGRP1536734