PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G344521_P01 | ||||||||
Common Name | Zm.62160 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | B3 | ||||||||
Protein Properties | Length: 513aa MW: 58094.6 Da PI: 8.3769 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.4 | 9.3e-12 | 231 | 312 | 15 | 96 |
-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS B3 15 rlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 +l + k++a +h +k ++ +tle+ ++++W k+ r s++ +l + W +Fv++n+++egD+++F +++ + +++v + GRMZM2G344521_P01 231 LLGITKEYAIAHFPDK--TTNVTLETpGKSKKWHPKFYKRDESRKNLLMGQWLDFVRDNHVQEGDICLFLPTKDeIRHTFMVYI 312 578999***9997564..457*****5566*******6688888899999*******************977664555566655 PP | |||||||
2 | B3 | 47.8 | 2.6e-15 | 443 | 510 | 31 | 99 |
.--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 ++++ +l + +g++We k+ + +++++ +l +GW +F++ ngL++gD+++F+l+++ s+ ++ v+++rk GRMZM2G344521_P01 443 TKGQN-ILLQCKGKTWEAKMMFHNGRRW-FLNGGWPDFARGNGLRVGDMCLFELKKKkSTLTMAVHIIRK 510 33333.456679********98888877.6999**********************888*********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.40.10 | 6.0E-8 | 2 | 54 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57903 | 1.36E-7 | 3 | 56 | IPR011011 | Zinc finger, FYVE/PHD-type |
PROSITE pattern | PS01359 | 0 | 5 | 50 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:2.40.330.10 | 1.7E-17 | 208 | 314 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-16 | 209 | 314 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.12E-16 | 216 | 313 | No hit | No description |
SMART | SM01019 | 0.003 | 216 | 316 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.828 | 217 | 316 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.6E-10 | 232 | 312 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-20 | 405 | 510 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.86E-18 | 406 | 510 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.77E-19 | 411 | 509 | No hit | No description |
SMART | SM01019 | 1.1E-6 | 413 | 511 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-13 | 431 | 510 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.605 | 448 | 511 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 513 aa Download sequence Send to blast |
MNTVCEVCGD IGYRQLLLCC RDCKRCAVHQ YCLDKVVYEA SLIKWFCYEC LQRRGEVTRI 60 SSLEKLSSER PLSQVHSRSP VQQLITKSVE SVRDAGPYSP NGGCEESFSC PGIKNTPSVR 120 ERSVDPINIS SDSHDTIEAS ESSERFMECQ KASLCRRRKT VKMAMVSSSS EESGEDTISE 180 NVSLGYVLAC RSSLSKAQKK RVTKLIQEIQ PEFTVFISIM RMSNVKLPGP LLGITKEYAI 240 AHFPDKTTNV TLETPGKSKK WHPKFYKRDE SRKNLLMGQW LDFVRDNHVQ EGDICLFLPT 300 KDEIRHTFMV YILHETTHSR CGAGFQRVGP CLGGASSAKM ASEVHIEDEP TAGEHVSSDS 360 DMPENSHEPL ESGDSDDPFE PPYFVPCRSP LSKSQKRMVE QRVRAIRSEV PICVAVMKNN 420 NVGIAQRWML ELCSRYASVY LPTKGQNILL QCKGKTWEAK MMFHNGRRWF LNGGWPDFAR 480 GNGLRVGDMC LFELKKKKST LTMAVHIIRK EQF |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.62160 | 0.0 | embryo| meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G344521 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G344521_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008665132.1 | 0.0 | uncharacterized protein LOC103643733 isoform X2 | ||||
TrEMBL | A0A1D6KXR5 | 0.0 | A0A1D6KXR5_MAIZE; B3 domain-containing protein | ||||
STRING | GRMZM2G344521_P02 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31640.1 | 5e-06 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G344521_P01 |