PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G343068_P01
Common NameLOC103629636
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 465aa    MW: 50901.8 Da    PI: 5.2959
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G343068_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding445e-141158148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+ Ed+ll d v++ G g+W+++ r+  + R++k+c++rw ++l
  GRMZM2G343068_P01 11 KGPWTKAEDKLLRDHVERNGEGNWNAVRRETELQRCGKSCRLRWTNHL 58
                       79*******************************************996 PP
2Myb_DNA-binding45.91.3e-1464107146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +g+++teE+  ++ ++ + G++ W+tIa++++ gRt++++k++w++
  GRMZM2G343068_P01  64 KGPFSTEEERTILVLHGLIGKK-WATIASHLP-GRTDNEIKNYWNT 107
                        79********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.488658IPR017930Myb domain
SuperFamilySSF466891.31E-288105IPR009057Homeodomain-like
SMARTSM007176.2E-121060IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-201265IPR009057Homeodomain-like
CDDcd001671.26E-101358No hitNo description
PfamPF139211.9E-131473No hitNo description
PROSITE profilePS5129422.64559113IPR017930Myb domain
SMARTSM007172.7E-1363111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2366112IPR009057Homeodomain-like
CDDcd001672.78E-966107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MARSSGGGLK KGPWTKAEDK LLRDHVERNG EGNWNAVRRE TELQRCGKSC RLRWTNHLRP  60
SLRKGPFSTE EERTILVLHG LIGKKWATIA SHLPGRTDNE IKNYWNTRVK RRQRARLPLY  120
QPDVEQEIAR LREENVNPLA DDDGRANTNA GLPPPPDLPR LYDSGYQLVL PPTTSHSSLI  180
NQDCPLQDQM QVFHVHHIGS QQPAFHQDVS AAAFSNTVSS GLPPLPTVRT QADLPPTNQF  240
KTCSGGTSGL LEPMLMIGDE QLLMRPDPSM VKVPSMPALS YRQLAVSGLL PAYGAGSDGD  300
FTPHCPLGED IHHGATWDFT FGNQTDAFTE EFVKPAKRRR TSEVGIVNMF PVAPPEDRLG  360
TYYGVSAAPS SSPVTDDRFT VASPWSWFGT CGGSTTPSTG PSSVVADDEF TVAPPGDCFG  420
TCGGSTVPLT GPSSAVVDDE FDYLDIEQFM WAVPPSIDDE HDSDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2791125107B-MYB
1h8a_C2e-27911225127MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.123701e-135pollen
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G343068
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G343068_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0387231e-133BT038723.1 Zea mays full-length cDNA clone ZM_BFb0313M23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008648940.10.0myb-like DNA-binding protein myb-1
TrEMBLA0A1D6LPK80.0A0A1D6LPK8_MAIZE; Putative MYB DNA-binding domain superfamily protein
STRINGGRMZM2G343068_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123972632
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.12e-56myb domain protein 33