PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G342588_P01
Common NameCPP12, LOC100381595
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family CPP
Protein Properties Length: 499aa    MW: 55124.1 Da    PI: 7.5005
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G342588_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.33.5e-1470109141
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                        k+kk+CnCk+s+Clk+YCeCfaag +C+  C+C++C N+ e
  GRMZM2G342588_P01  70 KKKKHCNCKNSQCLKLYCECFAAGDYCDG-CNCKQCGNTVE 109
                        589**************************.********987 PP
2TCR50.63.7e-16154193140
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                        k++kgC+Ckks ClkkYCeCf+a+  Cs++CkC dCkN e
  GRMZM2G342588_P01 154 KHNKGCHCKKSGCLKKYCECFQANILCSKNCKCMDCKNYE 193
                        589***********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.8E-1470110IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.20571194IPR005172CRC domain
PfamPF036385.5E-1172107IPR005172CRC domain
SMARTSM011144.4E-19154195IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.1E-12157192IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MEEEKQQMEP PAPALVREAG AEPRAPRQTQ QQPNTAVQVQ PSMPVLRPWP MEITLSMKPV  60
VEMKSGTPAK KKKHCNCKNS QCLKLYCECF AAGDYCDGCN CKQCGNTVEN EKGRQEAINN  120
TKLRNPNAFQ PKIENGPIPS SVWKDAGALP SHPKHNKGCH CKKSGCLKKY CECFQANILC  180
SKNCKCMDCK NYEGSEELRS TTQGDNSCDR NNIQQAANVA LNGAIGSSGY RFSPVRRKRP  240
PEDPHCQTLN VEGSMMQTQF RETNNVDVSQ MTSSTGRDGS TVNFQGTSKL VYRSPLANTI  300
HITDVNDLAN HLVIACRKAA ERFTTIVDNK VEMEIDKEIC TNTDQKFDEN KKGVQKAALS  360
QLGKVTDIDQ QIVDDSRLHC SDTQDDARPA SPGTQALLCD EQDLTFGTVH RSSIPVAMHD  420
QVISELHAAQ ESAVLKELRN NLRLIIARGK LNAEGKSASG TRMELDALRH HESSTSLAPV  480
RAEEKSNTTD GPEITHELK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-26652004129Protein lin-54 homolog
5fd3_B4e-26652004129Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.393680.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G342588
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G342588_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0617080.0BT061708.1 Zea mays full-length cDNA clone ZM_BFb0176J22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001167886.10.0uncharacterized protein LOC100381595
TrEMBLC0HHA20.0C0HHA2_MAIZE; CPP transcription factor
STRINGGRMZM2G342588_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57552653
Representative plantOGRP14691745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.14e-88Tesmin/TSO1-like CXC domain-containing protein