PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G341747_P01
Common NameLOC103626260, Zm.30228
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family CAMTA
Protein Properties Length: 1020aa    MW: 113248 Da    PI: 5.5566
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G341747_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11728.5e-54211382118
               CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                        lke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kk d ktv+E+he+LK g+++vl+cyYah+een 
  GRMZM2G341747_P01  21 LKEaQHRWLRPAEICEILKNYRNFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKNDQKTVKEAHERLKSGSIDVLHCYYAHGEENI 112
                        45559*************************************************************************************** PP

               CG-1  93 tfqrrcywlLeeelekivlvhylevk 118
                        +fqrr+yw+Lee++ +ivlvhyle+k
  GRMZM2G341747_P01 113 NFQRRTYWMLEEDYMHIVLVHYLETK 138
                        ***********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.86117143IPR005559CG-1 DNA-binding domain
SMARTSM010762.7E-7220138IPR005559CG-1 DNA-binding domain
PfamPF038596.8E-4823136IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.108.0E-6446533IPR013783Immunoglobulin-like fold
SuperFamilySSF812962.6E-16447533IPR014756Immunoglobulin E-set
PfamPF018333.8E-8447525IPR002909IPT domain
SuperFamilySSF484036.22E-17640743IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.8E-17642742IPR020683Ankyrin repeat-containing domain
CDDcd002041.94E-13642739No hitNo description
PROSITE profilePS5029717.316648741IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.603648680IPR002110Ankyrin repeat
PROSITE profilePS500888.816681713IPR002110Ankyrin repeat
SMARTSM002480.0096681710IPR002110Ankyrin repeat
SuperFamilySSF525402.39E-8839892IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.086841863IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.407842871IPR000048IQ motif, EF-hand binding site
PfamPF006120.0032843862IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022864886IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.56865889IPR000048IQ motif, EF-hand binding site
PfamPF006122.0E-4867886IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010150Biological Processleaf senescence
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1020 aa     Download sequence    Send to blast
MASAEARRLA VVPQLDIEQI LKEAQHRWLR PAEICEILKN YRNFRIAPEP PNRPPSGSLF  60
LFDRKVLRYF RKDGHNWRKK NDQKTVKEAH ERLKSGSIDV LHCYYAHGEE NINFQRRTYW  120
MLEEDYMHIV LVHYLETKGG KSSRARGNNM IQEAAVDSPL SQLPSQTMEG ESSLSGQASE  180
YEEAESDIYS GGAGHDSFTW VQQHENGTGP MIASSVFSSY TPALSIGNYH GLHATQNTSF  240
YPVNQLNSPV ILNGSSAMLG TNGCANQTDL PSWNSVIELD HEPVQMPDLQ FPVPPDQGTS  300
TEGLGVDYLT FDEVYSDGLS LQDIGATGTH GESYLQFSSG TGDLAATVNS FPQENDGSLE  360
AAIGYPFLKT QSSNLSDILK DSFKKTDSFT RWMSKELPEV EDSQIQSSSG AFWSSEEANN  420
IIEASNHEAL DQFTVSPMLS QDQLFSIVDF SPNWTYVGSK TKILVAGNIL NDSQITERSK  480
WSCMFGEVEV PANILADGTL ICYSPQHKPG RVPFYITCSN RLACSEVREF EFRPTVSQYM  540
DAPSPHGETN KVYFQIRLDK LLSLGPDEYQ ATVSNPTLEM VDLSRKISSL MASNDEWSNL  600
LKLAVDNEPS TADQQDQFAE NLIKGKLHIW LLNKVGMGGK GPSVLDDEGQ GVLHLAAALG  660
YDWAIRPTLA AGVNINFRDI HGWTALHWAA FCGRESTVVA LIALGAAPGA LTDPTPDFPG  720
STPADLASSN GQKGISGFLA ECSLTSHLQV LNLKEANMAQ ISGLPGIGDV TERDSLQPPS  780
GDSLGPVRNA TQAAARIYQV FRVQSFQRKQ AAQYEDKGGM SDERALSLLS VKPPKSGQLD  840
PLHSAATRIQ NKFRGWKGRK EFLLIRQRIV KIQAHVRGHQ VRKHYRKIVW SVGIVEKVIL  900
RWRRRGAGLR GFRSQEGSVE SSSGGTSSSS IQNKSSGDDY DFLQEGRKQT EERLQKALAR  960
VKSMAQYPEA RDQYQRIFTV VSKMQESQAM QEKMPEESAE MDMSEFKELW DDDAPIPGYF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.302280.0sheath
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G341747
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00042PBMTransfer from AT2G22300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G341747_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008644877.10.0calmodulin-binding transcription activator 3 isoform X2
TrEMBLA0A1D6GRK60.0A0A1D6GRK6_MAIZE; Calmodulin-binding transcription activator 2
STRINGGRMZM2G341747_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Representative plantOGRP5621565
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains