PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G339848_P01
Common NameLOC100501975, ZEAMMB73_085913
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HB-other
Protein Properties Length: 881aa    MW: 96882.1 Da    PI: 5.2719
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G339848_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox14.75.4e-05653713154
                        TT--SS--HHHHHHHHHHHHHSSS--HH..HHHHHHHHC.....TS-HHHHHHHHHHHHHH CS
           Homeobox   1 rrkRttftkeqleeLeelFeknrypsae..ereeLAkkl.....gLterqVkvWFqNrRak 54 
                        rrkR  +++eq++eLe++   ++ + ++    +  ++kl     ++t +q k+W  Nr+ak
  GRMZM2G339848_P01 653 RRKRNIMNSEQIDELEKALVDEPEMHRNpvLLQGWSEKLslqgpEITSSQLKNWLNNRKAK 713
                        89***************99965555544114566777777777*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.2E-6634714IPR009057Homeodomain-like
PROSITE profilePS5007110.009650717IPR001356Homeobox domain
SMARTSM003894.7E-4652721IPR001356Homeobox domain
CDDcd000861.03E-4653716No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 881 aa     Download sequence    Send to blast
MGPPLVIFFG LMIDMVSAVE ELSGLSSKEL NEMLKESDNF VLQSKAEGGG PKQTLVDMEK  60
LVSSLPLHLI AVCLELRQGP DLTYVLRGMR FLHSLSDLAS RHTRLEQVLL DDVKLSEQVM  120
DLIFFLLSIL AEQKKENNVG ASPLVHASLV AASLHLLTSY FSSQWHELVH ILLAHPKVDI  180
FVDVAFDSLH EDELSRNGGI LSLSHTILKL AVPECLKQST DLVASISRLK AKILSILLQL  240
CEAESVSYLD EVATNSNSMR LGQTLALEVL NLLKIAFGKK KYITSDSHDK VKIYPMGSML  300
ISALRLVDVF SDDSNFRSSF LTNTVPFLTQ ILATPHGEFV SSWCSVNLPA IEEDASLDYD  360
PFVASEVALL ASNNVLTEAK ADYSCPFRPS LPSVAYAQTR TSCVVKIIAN LHVFIPNICE  420
EQERDLFLQN FQKYLVSGSS KLSADQPASS DFDATKVCRN LGSLSDYAKT LVPNLLNGED  480
LLLLSDFSDK LQSWCKSQVA VKVVQNDIPP ESMEDMHPMQ QPLPTRASTP DSKMNNFPKD  540
VQNMEVSAPI PPINREGNDK DETPKNTVSR NGGFLQNAVG QDLVHLGVAR TASGGSSAVT  600
SVVSTGHQRS KMDLDPASGS VDNFKTPELT KENGLQGDDK GESSVYDERQ PKRRKRNIMN  660
SEQIDELEKA LVDEPEMHRN PVLLQGWSEK LSLQGPEITS SQLKNWLNNR KAKLARIAKE  720
RGTFEGDNAD KPSTPHPGES SESAGEDNYI PPARVMTAPS KGRLVSPDGN EKTSQAELSP  780
NTMLIRPFTR SFSLEPGRLV SLVDSDGKEV GRGKIFQAPG KSPAPVESRI CTVDVTELRT  840
EKWRELPHPS EASGRTFQEA EARNGGIMRV SWDSGRLLPV V
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.858660.0endosperm| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G339848
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G339848_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9466780.0EU946678.1 Zea mays clone 322151 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001350130.10.0uncharacterized protein LOC100501975
TrEMBLA0A1D6PPE70.0A0A1D6PPE7_MAIZE; Putative homeodomain-like transcription factor superfamily protein
STRINGGRMZM2G339848_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51261418
Representative plantOGRP385357