PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G339751_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | WOX | ||||||||
Protein Properties | Length: 159aa MW: 17479.7 Da PI: 10.1006 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.3 | 7.5e-20 | 33 | 96 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC........TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl........gLterqVkvWFqNrRakekk 57 R+++tkeq+ +Le l+e r psae+++++A++l ++ + V++WFqN+Ra+ ++ GRMZM2G339751_P01 33 ARWNPTKEQVAVLEGLYEHgLRSPSAEQIQQIADRLrehghghgAIEGKSVFYWFQNHRARLRQ 96 6*****************99*****************************************996 PP | |||||||
2 | Wus_type_Homeobox | 94.2 | 1.1e-30 | 32 | 97 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyG....kiedkNVfyWFQNrkaRerqk 64 +RW+Pt+eQ+ +Le ly++Glr+P++e+iq+i+ +L+e+G +ie+k VfyWFQN++aR rq+ GRMZM2G339751_P01 32 AARWNPTKEQVAVLEGLYEHGLRSPSAEQIQQIADRLREHGhghgAIEGKSVFYWFQNHRARLRQQ 97 68************************************97522227****************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.58 | 28 | 97 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.76E-14 | 30 | 100 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.8E-8 | 30 | 101 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-10 | 32 | 101 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.0E-17 | 33 | 96 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.03E-7 | 34 | 98 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MDMEIPQQQA AHGQDESGPA APPLSPASAA AAARWNPTKE QVAVLEGLYE HGLRSPSAEQ 60 IQQIADRLRE HGHGHGAIEG KSVFYWFQNH RARLRQQRQK QESFAYFTRL LRRPPPLPVL 120 SMPPAPPYRH GRVPSPATIT MPAPPPPTPA ACYNSGGSR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.72511 | 1e-115 | cell culture| endosperm |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G339751 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G339751_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM234778 | 1e-111 | AM234778.1 Zea mays partial mRNA for WOX2B protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023156690.1 | 1e-112 | WUSCHEL-related homeobox 5 isoform X1 | ||||
Swissprot | A2WWU7 | 6e-35 | WOX5_ORYSI; WUSCHEL-related homeobox 5 | ||||
Swissprot | Q8LR86 | 6e-35 | WOX5_ORYSJ; WUSCHEL-related homeobox 5 | ||||
TrEMBL | A0A1D6G8N0 | 1e-110 | A0A1D6G8N0_MAIZE; WUSCHEL-related homeobox 2 | ||||
STRING | GRMZM2G339751_P01 | 1e-112 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7509 | 35 | 48 | Representative plant | OGRP8582 | 11 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59340.1 | 2e-29 | WUSCHEL related homeobox 2 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G339751_P01 |