PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G338259_P02
Common NameLOC100274571
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 805aa    MW: 89801.6 Da    PI: 6.2497
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G338259_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.33e-23128229199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++ +++a+e+       +++++  ++l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F   
  GRMZM2G338259_P02 128 FCKTLTASDTSTHGGFSVLRRHADEClppldmtQSPPT--QELVAKDLHGMEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL-- 215
                        99*****************************7555544..58************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        + +++el+v+v+r+
  GRMZM2G338259_P02 216 RGENGELRVGVRRA 229
                        449999*****996 PP
2Auxin_resp112.54e-37254335183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        a+ha++tks+F+v+Y+Pr+s+seF+++++++++++k+++s+GmRf+m+fe+e+++e+r++Gt+vg ++ldp  Wp+S Wr Lk
  GRMZM2G338259_P02 254 AWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNNYSIGMRFRMRFEGEEAPEQRFTGTIVGCENLDP-LWPDSSWRYLK 335
                        89*********************************************************************.9*******996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-41118243IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-39123257IPR015300DNA-binding pseudobarrel domain
CDDcd100173.84E-21126228No hitNo description
PfamPF023624.0E-21128229IPR003340B3 DNA binding domain
PROSITE profilePS5086311.928128230IPR003340B3 DNA binding domain
SMARTSM010191.8E-23128230IPR003340B3 DNA binding domain
PfamPF065071.4E-33254335IPR010525Auxin response factor
PfamPF023092.8E-5674726IPR033389AUX/IAA domain
SuperFamilySSF542777.36E-13684767No hitNo description
PROSITE profilePS5174525.347690783IPR000270PB1 domain
PfamPF023091.4E-8730775IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 805 aa     Download sequence    Send to blast
MPPATAMAPP SQPPSNSGDP LYPELWRACA GPLVTVPRVG DLVFYFPQGH IEQVEASMNQ  60
VAGNQMRLYD LPPKLLCRVL NVELKAETDT DEVYAQIMLM PEPEQTDVPA EKPSSAPAAS  120
PRPAVRSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMT QSPPTQELVA KDLHGMEWRF  180
RHIFRGQPRR HLLQSGWSVF VSSKRLVAGD AFIFLRGENG ELRVGVRRAM RQLSNVPSSV  240
ISSQSMHLGV LATAWHAINT KSMFTVYYKP RTSPSEFIIP YDQYMESVKN NYSIGMRFRM  300
RFEGEEAPEQ RFTGTIVGCE NLDPLWPDSS WRYLKVRWDE PSTIPRPDRV SPWKIEPASS  360
PPVNPLVHSS RAKRPRQNVP PPSLESSVLT KEGATKVEID SAQTQHQNSV LQGQEQMTLR  420
NNLTESADSD STVQKPMMWS PSLNGKAHTH FQQRPAMDNW MPLGRRENDF KDTRSAFKDA  480
RTASQSFGDT QGFFVQAYDD NHHRLSFKNQ GSTHRFADPY FYMPQQSSVT VESSTRTQTA  540
NNDLCFWGDQ NAMYGNPSDQ QQGFNFGQNP SSWLNQPFPQ VEQPRVVRPH ATVAPFDLEK  600
TREGSGFKIF GFQVDTTSPS PVQLSSPLPA IQEHVLQTRP SAPVNELQPV QIECLPEGSV  660
STAGTATENI QQAPQSSKDI QSKSQGASTR SCTKVHKQGV ALGRSVDLSK FTDYGELQAE  720
LDKMFDFEGE LVSGSQNWQI VYTDDEGDMM LVGDDPWEEF CSIVRKIYIY TKEEVQKMNS  780
KSAAPRKEES PAAGGGGGCA AATNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1661236010357Auxin response factor 1
4ldw_A1e-1661236010357Auxin response factor 1
4ldw_B1e-1661236010357Auxin response factor 1
4ldx_A1e-1661236010357Auxin response factor 1
4ldx_B1e-1661236010357Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1179920.0cell culture| ear| embryo| endosperm| glume| meristem| ovary| pericarp| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G338259
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G338259_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0433920.0BT043392.1 Zea mays full-length cDNA clone ZM_BFc0176G08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001307056.10.0uncharacterized protein LOC100274571
SwissprotQ5JK200.0ARFD_ORYSJ; Auxin response factor 4
TrEMBLA0A1D6N2H00.0A0A1D6N2H0_MAIZE; Auxin response factor
STRINGGRMZM2G338259_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.40.0auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Song X, et al.
    Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
    Plant J., 2012. 71(3): p. 378-89
    [PMID:22443269]
  3. Kishimoto N, et al.
    Identification of the duplicated segments in rice chromosomes 1 and 5 by linkage analysis of cDNA markers of known functions.
    Theor. Appl. Genet., 1994. 88(6-7): p. 722-6
    [PMID:24186168]