PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G337011_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 281aa    MW: 31346.9 Da    PI: 7.365
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G337011_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.21.2e-10171234147
                        TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqky 47 
                        r+ WT+e++e+lv+a  ++ ++            W  Ia+t +       +Rt+kq+k++w +y
  GRMZM2G337011_P01 171 RLEWTKEDEEKLVNAWFMHSNDpisgnnksrssFWGQIAATYNstsdpiRHRTAKQLKDHWVTY 234
                        789**********************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.027166235IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.5E-7170234IPR009057Homeodomain-like
SuperFamilySSF466892.39E-6170249IPR009057Homeodomain-like
SMARTSM007170.0017170237IPR001005SANT/Myb domain
PfamPF002497.9E-7171234IPR001005SANT/Myb domain
CDDcd001672.54E-4173234No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MSGWSPDLNT FTDLLQSDGS PTTLPLDESS SLHRRSDVSA SLPRALFPAT RPPPYPYPYH  60
LYQYPPSSYG QPPTSQAGIQ ASFPVRPYAP PPPAADGSQA SFQVPPYAPP PYAPPLYGVP  120
PYAPYAPPPY GAPHPYAPPT YGTPPPVTPL SVGSENQAEE NPVPKEKRPK RLEWTKEDEE  180
KLVNAWFMHS NDPISGNNKS RSSFWGQIAA TYNSTSDPIR HRTAKQLKDH WVTYNWEVTK  240
FNGFYLQEER LRQSGADDAM VMDAAMARFE GKMGHPFKRH H
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.957891e-125glume| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G337011
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G337011_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0417801e-122BT041780.1 Zea mays full-length cDNA clone ZM_BFb0053P10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008662552.11e-161ribonuclease 3
TrEMBLA0A3L6EIR91e-158A0A3L6EIR9_MAIZE; Glutathione S-transferase T3
STRINGGRMZM2G337011_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3263337