PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G336533_P02
Common Namepco133091
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 312aa    MW: 34572.3 Da    PI: 10.3834
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G336533_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.24.8e-511532831128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtd+elv +yL++k++g++l++  +i+evd+y+++PwdLp+++  + +ewyfF++rd+ky++g+r+nra+ +gyWkatg dk+v
  GRMZM2G336533_P02 153 LPPGFRFHPTDDELVEHYLCRKAAGQRLPV-PIIAEVDLYRFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRAAGDGYWKATGADKPV 243
                        79****************************.88***************8777899************************************* PP

                NAM  93 lsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +    + ++ g+kk Lvfy g+ap+g+ktdW+mheyrl
  GRMZM2G336533_P02 244 APRaaaaDARTLGIKKALVFYAGKAPRGVKTDWIMHEYRL 283
                        99888877888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-58149288IPR003441NAC domain
PROSITE profilePS5100555.03153303IPR003441NAC domain
PfamPF023657.6E-27154283IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MGPESADVAR DATRGPVQSR VAEVAVHEPV APPRALSLPN PHPPPLSRGI ALPPARRYIS  60
FLCPRFSASM TAQNPPTGQD TQSRATPPTI GDQQPAAGAS CLKTPSRSRT EDWQAQPKPP  120
LLVLGFIASN PDHIMGQPVT RRRERDAEAE LDLPPGFRFH PTDDELVEHY LCRKAAGQRL  180
PVPIIAEVDL YRFDPWDLPE RALFGAREWY FFTPRDRKYP NGSRPNRAAG DGYWKATGAD  240
KPVAPRAAAA DARTLGIKKA LVFYAGKAPR GVKTDWIMHE YRLADAGRRA KKGSLRVSFY  300
TQKKERAERG IF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-921422834140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1376260.0endosperm| ovary| pericarp| pollen| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G336533
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G336533_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0401670.0BT040167.1 Zea mays full-length cDNA clone ZM_BFc0068P23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340492.11e-157uncharacterized protein LOC100273092
TrEMBLA0A1D6GER61e-155A0A1D6GER6_MAIZE; NAC domain-containing protein 2
STRINGGRMZM2G336533_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.18e-68NAC family protein