PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G336533_P01
Common Namepco133091
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 436aa    MW: 48024.3 Da    PI: 8.299
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G336533_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.29.7e-511532831128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtd+elv +yL++k++g++l++  +i+evd+y+++PwdLp+++  + +ewyfF++rd+ky++g+r+nra+ +gyWkatg dk+v
  GRMZM2G336533_P01 153 LPPGFRFHPTDDELVEHYLCRKAAGQRLPV-PIIAEVDLYRFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRAAGDGYWKATGADKPV 243
                        79****************************.88***************8777899************************************* PP

                NAM  93 lsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +    + ++ g+kk Lvfy g+ap+g+ktdW+mheyrl
  GRMZM2G336533_P01 244 APRaaaaDARTLGIKKALVFYAGKAPRGVKTDWIMHEYRL 283
                        99888877888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-62149308IPR003441NAC domain
PROSITE profilePS5100560.125153308IPR003441NAC domain
PfamPF023651.5E-26154283IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006505anatomycentral spike of ear inflorescence
PO:0020127anatomyprimary root
PO:0025287anatomyseedling coleoptile
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007045developmental stagecoleoptile emergence stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MGPESADVAR DATRGPVQSR VAEVAVHEPV APPRALSLPN PHPPPLSRGI ALPPARRYIS  60
FLCPRFSASM TAQNPPTGQD TQSRATPPTI GDQQPAAGAS CLKTPSRSRT EDWQAQPKPP  120
LLVLGFIASN PDHIMGQPVT RRRERDAEAE LDLPPGFRFH PTDDELVEHY LCRKAAGQRL  180
PVPIIAEVDL YRFDPWDLPE RALFGAREWY FFTPRDRKYP NGSRPNRAAG DGYWKATGAD  240
KPVAPRAAAA DARTLGIKKA LVFYAGKAPR GVKTDWIMHE YRLADAGRRA KKGSLRLDDW  300
VLCRLYNKKN EWEKMRLGKG AAAGAVKEEE AMDMSTSHSQ ITHSWGETRT PESEIVDNDL  360
PFPDPAMMVP KKERVDDGGS ARTSDLFVDL SYDDIQGMYS GLDMLPPAGE DLYSSLFASP  420
RVRGNQPTGP AGLGPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-1051423144174Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1376260.0endosperm| ovary| pericarp| pollen| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G336533
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and stamens. {ECO:0000269|PubMed:16924117}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that possesses transactivation activity (PubMed:16924117, PubMed:20632034). Transcription activator involved in response to abiotic stresses. Plays a positive role during dehydration and salt stress. Binds specifically to the 5'-CATGTG-3' motif found in promoters of stress-responsive genes (PubMed:16924117). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G336533_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stresss, salt stress and cold stress (PubMed:16924117, PubMed:20632034). Induced by abscisic acid (ABA) (PubMed:16924117). Induced by methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0541130.0BT054113.1 Zea mays full-length cDNA clone ZM_BFb0108F08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340492.10.0uncharacterized protein LOC100273092
SwissprotQ75HE51e-154NAC2_ORYSJ; NAC domain-containing protein 2
TrEMBLA0A1D6GER60.0A0A1D6GER6_MAIZE; NAC domain-containing protein 2
STRINGGRMZM2G336533_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44143071
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.13e-77NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  3. Chen Q,Wang Q,Xiong L,Lou Z
    A structural view of the conserved domain of rice stress-responsive NAC1.
    Protein Cell, 2011. 2(1): p. 55-63
    [PMID:21337010]