PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G335814_P01
Common NameGRAS16
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 732aa    MW: 82795.3 Da    PI: 6.547
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G335814_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS350.13.5e-1073527231374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        l++ L++cA+avs ++++la+ +L+ +++++s +gd +qRla+++++ L+arla+++s+ly+ l ++ ++   ++  l++++l   v P+l+
  GRMZM2G335814_P01 352 LRTILIHCAQAVSVNNHTLANDMLNIIRQHSSITGDDTQRLAFCLVNCLEARLAGTGSQLYRNLIATCSD---VAAILKVFQLSLAVIPLLR 440
                        5789*********************************************************999888887...9****************** PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl 181
                        +sh   N++Il+ ++g+++vHi+Df+i  G+QWp+Ll++La+R++gpp++RiTg++ p++g   ++ + ++tg+rLa++A+ ++vpfe+++ 
  GRMZM2G335814_P01 441 VSHYFSNKTILDVLKGKSKVHIVDFGICFGFQWPSLLEQLAKREGGPPKVRITGIDLPKQGfrpDRMNKQNTGQRLADYASMFNVPFEYQA- 531
                        ***********************************************************99*99999999*********************. PP

               GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                        +++++e++++e+L+++++++l+Vn++ ++++l de+vs++s+r++vL++++ ++Pkv+v+   + + +++ Fl+rf e +++ysa+fd l++
  GRMZM2G335814_P01 532 ISSKWETIRIEDLNIDEDDVLIVNCIDRMKNLGDETVSINSARNRVLNTIRMMKPKVFVHGIVNGSFGTPFFLTRFKEVMYHYSAFFDILDK 623
                        7******************************************************************************************* PP

               GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365
                        ++pr++e+r+ +Er ++  ++ nv+aceg+er+er e+++kW++r  +aG+++++l+ +++k  + ++ k+++d y ++e++++l++gWk+r
  GRMZM2G335814_P01 624 TVPRDNETRMLIERGIFLCQLLNVIACEGSERIERPENYKKWKSRNLNAGLEQLQLNPDIVKVTRDMMGKYHKD-YVINEDDHWLLMGWKGR 714
                        ************************************************************************77.***************** PP

               GRAS 366 pLvsvSaWr 374
                         L ++S W+
  GRMZM2G335814_P01 715 ILNAISTWK 723
                        ********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.317326704IPR005202Transcription factor GRAS
PfamPF035141.2E-104352723IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MDFNDKPSSN FDEDFQSNMS ATSGFYSFIH PANESNELEL FLDQPRSAHH YPPVSNASND  60
SGHITSTTSC STEICGPQFC DLSSNATPDW YGTSVTDSSN NSWINSDITI SYLNKLLTDE  120
DSDDKVKPHH GECALRAMEE PFYRILAQNN PAYPESPSLC SRGHLNNLGD NINKSLGQPC  180
SSCSVAIDWS NSHSNHILQA FEAPWSLSDV VKETSRSAEC TRNMELGVRI DGLSIAEKRS  240
RDNQSLQVNV ADASKHTSSE LPSGNYSRQE DSYLIEARSS KQVAFSFNGP IRDEMFDRVL  300
LFSEHKPTYE AIVLQEMMAN KSTGHPQNEQ GRTPARRKMR GKKQQKKEVV DLRTILIHCA  360
QAVSVNNHTL ANDMLNIIRQ HSSITGDDTQ RLAFCLVNCL EARLAGTGSQ LYRNLIATCS  420
DVAAILKVFQ LSLAVIPLLR VSHYFSNKTI LDVLKGKSKV HIVDFGICFG FQWPSLLEQL  480
AKREGGPPKV RITGIDLPKQ GFRPDRMNKQ NTGQRLADYA SMFNVPFEYQ AISSKWETIR  540
IEDLNIDEDD VLIVNCIDRM KNLGDETVSI NSARNRVLNT IRMMKPKVFV HGIVNGSFGT  600
PFFLTRFKEV MYHYSAFFDI LDKTVPRDNE TRMLIERGIF LCQLLNVIAC EGSERIERPE  660
NYKKWKSRNL NAGLEQLQLN PDIVKVTRDM MGKYHKDYVI NEDDHWLLMG WKGRILNAIS  720
TWKPSESYDG DY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-443367243380Protein SCARECROW
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G335814
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G335814_P01
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280170.0KJ728017.1 Zea mays clone pUT6153 GRAS transcription factor (GRAS16) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023157117.10.0scarecrow-like protein 34
TrEMBLA0A060D7B70.0A0A060D7B7_MAIZE; GRAS transcription factor (Fragment)
STRINGGRMZM2G335814_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117882640
Representative plantOGRP1136547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-143GRAS family protein