PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G334722_P01
Common NameLOC100191872
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Trihelix
Protein Properties Length: 387aa    MW: 40507.6 Da    PI: 4.2745
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G334722_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix34.74.6e-1187170170
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..............rergferspkqCkekwenlnkrykkikegekk 70 
                        +Wt  e+laL++ +  +++  +r+ ++ ++W+ v++++              r rg +r++ +C+ +we l+ +y +++++e +
  GRMZM2G334722_P01  87 EWTPAETLALVAEVAAVDDGWSRSVSAFQKWAMVAENLaaseallsgpgsrrRGRGSKRTAGECRRRWEALAAEYGAVRRWEVR 170
                        5*************************************************99999**************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.4E-686178No hitNo description
Gene3DG3DSA:1.10.10.605.5E-487157IPR009057Homeodomain-like
PROSITE profilePS500906.66788158IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MDPAAADRPC VIQSLPANCN TLPPPLVQAL PANCNTLPPP LVQALPAKTN PSQPSSPTAK  60
RRHAPPAPGS GPAPPSPRRT RSGGAPEWTP AETLALVAEV AAVDDGWSRS VSAFQKWAMV  120
AENLAASEAL LSGPGSRRRG RGSKRTAGEC RRRWEALAAE YGAVRRWEVR TGATYWEMGA  180
AARRKAGLPA EFDDEVYGAM DALIRVEEAL LADAAGGGAG GEDVEGLVGG GAGCVGVEVG  240
KQDGGDSVEA EVGEEQVQQD ASAGEEEEQD VDEDVEEMQE DGGNAGASND LGHETGTSVE  300
PERSQDIASE LANKLHDNAQ HIHAILKEEA AQDGGQNHDL GSSMLPDAME AARRKADELI  360
QSLGGLVSYL NQFTELVKET GFENIAT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.286390.0meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G334722
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G334722_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0341130.0BT034113.1 Zea mays full-length cDNA clone ZM_BFc0028J08 mRNA, complete cds.
GenBankBT0857100.0BT085710.1 Zea mays full-length cDNA clone ZM_BFc0050E20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130768.10.0uncharacterized protein LOC100191872
TrEMBLB4FAH50.0B4FAH5_MAIZE; Uncharacterized protein
STRINGGRMZM2G334722_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63532433
Representative plantOGRP74821314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.12e-12sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]