PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G334225_P01
Common NameLOC100282219
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MIKC_MADS
Protein Properties Length: 390aa    MW: 43641.6 Da    PI: 4.6756
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G334225_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.38.5e-283382150
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       krien++nrqvtfskRrng++KKA+ELSvLCd+++a+i+fs++++l  +s
  GRMZM2G334225_P01 33 KRIENNTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSNRLSHFS 82
                       79********************************************9997 PP
2K-box21.87.7e-09135204978
              K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78 
                          +++ e+lqqe++  + ++e L++++R +  +  + +s+++ +  e+ L + l+ + ++K+ ll++++ 
  GRMZM2G334225_P01 135 PINSNVEELQQEIKTYQHQMEVLKEQLRMFEPDLTTLMSMNDFETCEKFLMDTLTCVEERKKYLLCNHVA 204
                        557899*******************9887777777789***************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.4362585IPR002100Transcription factor, MADS-box
SMARTSM004326.4E-382584IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.76E-3026106IPR002100Transcription factor, MADS-box
CDDcd002659.91E-372699No hitNo description
PRINTSPR004041.9E-252747IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002781IPR002100Transcription factor, MADS-box
PfamPF003191.6E-253481IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-254762IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-256283IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MSICIPGSPL QFACNLGGDR LHSIMGRVKL QIKRIENNTN RQVTFSKRRN GLIKKAYELS  60
VLCDIDIALI MFSPSNRLSH FSGRRRIEDV ITRYINLPEH DRGGVVRNRE YLMKMLAKLK  120
CEGNIAEQLT PNKEPINSNV EELQQEIKTY QHQMEVLKEQ LRMFEPDLTT LMSMNDFETC  180
EKFLMDTLTC VEERKKYLLC NHVAPFDPSA SDMQQHVDMF ALPPAPPHQQ EQQGDDLGGA  240
ASAFGGDVSW FADGMPTSSI FAASDPILYF RDQVMFDSTS TMRRDSMVAG VDPGMTSVCQ  300
MEQQAPSVDW QQAYTSAEFF STLIPSTPYP LDDQMQNDMA QVLTSPMVPP HEHDKVEVPM  360
SSSNVPTDGD CGTTLAAAQE DGLPGVVNIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-182599174Myocyte-specific enhancer factor 2B
1tqe_Q3e-182599174Myocyte-specific enhancer factor 2B
1tqe_R3e-182599174Myocyte-specific enhancer factor 2B
1tqe_S3e-182599174Myocyte-specific enhancer factor 2B
6bz1_A3e-182599174MEF2 CHIMERA
6bz1_B3e-182599174MEF2 CHIMERA
6bz1_C3e-182599174MEF2 CHIMERA
6bz1_D3e-182599174MEF2 CHIMERA
6c9l_A3e-182599174Myocyte-specific enhancer factor 2B
6c9l_B3e-182599174Myocyte-specific enhancer factor 2B
6c9l_C3e-182599174Myocyte-specific enhancer factor 2B
6c9l_D3e-182599174Myocyte-specific enhancer factor 2B
6c9l_E3e-182599174Myocyte-specific enhancer factor 2B
6c9l_F3e-182599174Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G334225
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G334225_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9600630.0EU960063.1 Zea mays clone 221530 MADS-box protein AGL66 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001148603.10.0MADS-box protein AGL66
TrEMBLA0A3L6E9M30.0A0A3L6E9M3_MAIZE; Agamous-like MADS-box protein AGL66
STRINGGRMZM2G334225_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49533360
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.18e-70AGAMOUS-like 66