PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G333582_P01
Common NameLOC103634934, ZEAMMB73_799658, Zm.148400
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 478aa    MW: 50401.9 Da    PI: 6.8631
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G333582_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.22.2e-11248290855
                        HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         Er+RR+++N++f+ L+  lP+ a      K +K +iL +A +Y++sL+
  GRMZM2G333582_P01 248 SERKRREKLNDSFHALKAALPPgA------KKDKTSILIRARDYVRSLE 290
                        6********************966......99999***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.662240289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-14241306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.04E-11242294No hitNo description
Gene3DG3DSA:4.10.280.107.1E-12244288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-11246295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-9248290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146864.67E-4281309No hitNo description
Gene3DG3DSA:1.20.5.1709.5E-5289308No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0009066anatomyanther
PO:0001007developmental stagepollen development stage
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MAMPPPTPAA TTASCAATLP AAEIQDAFLS IDMHTSMQIS MRMNMDDEAA VVYHMSSNGG  60
ATAIDMHDPI VDGLLDDPHH GAGGRACSSF PSSSSCSSLS LPAASASLSC SPDDPDSSSA  120
HHILAAPAAG GGNQQYPEVS SHVPLLPPPP PPPVVPSYDH HHQYTDLHAP APAKPTGAFK  180
HYARHLGPKR PPKPGACGQR MFKTAMSVLS KMHVAARYSQ QQYYYQAAAA AEAAQPPPSV  240
NQLQHMFSER KRREKLNDSF HALKAALPPG AKKDKTSILI RARDYVRSLE AKVAELEEKN  300
KSLESRLTRR TDGSSDDDDN GSGETTKVEV EITRTANEEL CTVKIEVRSP PAAAASPCNR  360
TDVVVRTLQC LKEQIGDGVS LVAMSTSGGA EPAATGVKNA FPRAVLTMQI KSPGTDWEEQ  420
PVKDAVAKVV ADALTTTTTP PLPPAAATTV PPAASPGLLI NDSSSANNSL TIRPAIMK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248253ERKRRE
2249254RKRREK
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G333582
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G333582_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008655733.10.0putative transcription factor bHLH041
TrEMBLA0A1D6FGD10.0A0A1D6FGD1_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRINGGRMZM2G333582_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Representative plantOGRP10417410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.16e-12bHLH family protein