PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G333565_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HB-other
Protein Properties Length: 455aa    MW: 48612.5 Da    PI: 8.8356
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G333565_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.21.4e-083694071854
                        HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        +Fe+  ++yp+++e+  LA++ +Lt +qV++WF N R +
  GRMZM2G333565_P01 369 MFENflHPYPKHHEKDVLAARSSLTRNQVSNWFINARVR 407
                        5776679******************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075267.4E-5250293IPR006563POX domain
SMARTSM003893.9E-4351415IPR001356Homeobox domain
CDDcd000861.09E-9353411No hitNo description
Gene3DG3DSA:1.10.10.601.7E-22354417IPR009057Homeodomain-like
SuperFamilySSF466892.48E-14357420IPR009057Homeodomain-like
PfamPF059208.9E-15368407IPR008422Homeobox KN domain
PROSITE profilePS5007110.722370411IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0008018anatomytransition vascular leaf
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0025142anatomyleaf tip
PO:0025541anatomybundle sheath cell
PO:0025589anatomyleaf lamina tip
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MTRSPLPITA CVTGTSSSAS ATASTWYGRS QISSPHYSGP WISRVTGRST IHGRGGDIMS  60
AEVPHFHPDV LLDQGGFGFG LGNTAVGGGS GRALRGEQHR AGLLRQPAGQ LLTNAPAPPR  120
DDRAGGRTRA GGRTPPDEMD DELYGVAGCD SRVAASLRCP SQSGAMAVWS SSKKPYGIWT  180
SAGGPVPVLA HETYHLAGAR LSDVGGLHYP LAACSGANAS TAVVASELTL CPNSIASSDS  240
TLNATEWTSN QCLDKIQSTT AKFNTLMHSP PGGGGICAPF AHRAVSAMYR GLRWWLAGEI  300
MATASRASCW GESSSSVTVA AGGDVERSWE SAFIQKHWSA QQLRRTEQQC WLPQRGLPEK  360
SVAVLKAWMF ENFLHPYPKH HEKDVLAARS SLTRNQVSNW FINARVRLWK PLTEEMYQDL  420
KRSSGAGGGG HGPAMEPQQQ HLSKRRICEL EDGGQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.860080.0meristem| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G333565
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G333565_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570060.0EU957006.1 Zea mays clone 1580361 homeodomain protein JUBEL1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141591.11e-123uncharacterized protein LOC100273707
RefseqXP_008681469.11e-123putative POX domain/homeobox DNA-binding domain family protein isoform X1
RefseqXP_008681470.11e-123putative POX domain/homeobox DNA-binding domain family protein isoform X1
TrEMBLA0A1D6DYM00.0A0A1D6DYM0_MAIZE; Uncharacterized protein
STRINGGRMZM2G333565_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-42homeobox gene 1