PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G330475_P01
Common NameZEAMMB73_558799
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 357aa    MW: 38887.8 Da    PI: 4.6026
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G330475_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.28.2e-1854101148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg+WT +Ed llv++++ +G g+W++ ar  g++Rt+k+c++rw++yl
  GRMZM2G330475_P01  54 RGPWTVDEDILLVNYIAAHGEGRWNSLARSAGLRRTGKSCRLRWLNYL 101
                        89********************************************97 PP

2Myb_DNA-binding51.22.8e-16107150146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  GRMZM2G330475_P01 107 RGNITVEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 150
                        7999******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.70849101IPR017930Myb domain
SuperFamilySSF466892.73E-3052148IPR009057Homeodomain-like
SMARTSM007171.5E-1453103IPR001005SANT/Myb domain
PfamPF002496.3E-1654101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2155108IPR009057Homeodomain-like
CDDcd001679.24E-1256101No hitNo description
PROSITE profilePS5129423.666102156IPR017930Myb domain
SMARTSM007175.6E-15106154IPR001005SANT/Myb domain
PfamPF002495.2E-15107150IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.7E-23109154IPR009057Homeodomain-like
CDDcd001673.46E-12111150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MDMDMGMTMV GLDEDLDQVL AAISSAGSSA TSAPAATGGS SEDDETTAAT ELRRGPWTVD  60
EDILLVNYIA AHGEGRWNSL ARSAGLRRTG KSCRLRWLNY LRPDVRRGNI TVEEQLLILE  120
LHSRWGNRWS KIAQHLPGRT DNEIKNYWRT RVQKHARRLR CDANSAQFRH LWMPRLLERA  180
QDLQQPAAAT VPAAVAQAAP ATTTTSAPPP ACYYNYYYDD HHHLAHQQGA LHQYYSETGS  240
PDDASSALRP PSSSLTADDG AARYAAAYET SANDLQVLHQ CGADAGSGPT TTTEDDVFAG  300
TTWSDLLATA TATGPDGDDS SSSMIGLQME DFGFGLGDLA DDGLWSLDDL FCFQQLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-26511541103MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G330475
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G330475_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0849801e-146BT084980.1 Zea mays full-length cDNA clone ZM_BFb0220H11 mRNA, complete cds.
GenBankKJ7269021e-146KJ726902.1 Zea mays clone pUT3447 MYB transcription factor (MYB134) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020398348.10.0transcription factor MYB2
TrEMBLA0A1D6FUZ60.0A0A1D6FUZ6_MAIZE; Putative MYB DNA-binding domain superfamily protein
STRINGGRMZM2G330475_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.11e-77myb domain protein 112