PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G329159_P01
Common NameLOC103631724, Zm.39556
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 562aa    MW: 60614.7 Da    PI: 6.9271
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G329159_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.9e-05451476123
                        EEET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                        ++C+  +C+++F++  +L +H ++ +
  GRMZM2G329159_P01 451 FECNidYCHMVFKTEAELAVHKKNmC 476
                        89*******************99866 PP
2zf-C2H212.80.00034534558123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        ykC+   C+k F+  s+++rH r++
  GRMZM2G329159_P01 534 YKCTtpGCSKIFKFVSDFTRHRRRC 558
                        99*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035519451473IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.887474503IPR007087Zinc finger, C2H2
SMARTSM003555.1474498IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.8E-4476505IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280476498IPR007087Zinc finger, C2H2
SuperFamilySSF576672.65E-13485540No hitNo description
PROSITE profilePS5015711.281504533IPR007087Zinc finger, C2H2
SMARTSM003550.0023504528IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280506528IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.8E-6506524IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene3DG3DSA:3.30.160.609.1E-9525556IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035522534556IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.933534562IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MRIRRYAARL LSSTSPGSAA TAAPSSPPRP PAASWLHTDD DDCCAFCELS RPASQEGLDA  60
IKHKGYIADR VLESVVRADE RVGLPERPPV PEVKKCKIDH VPPVNKACVG LQVVKLAAKP  120
EGAAPASEDA ADPATKAGVF VVNDAAIEQG VKCIASLSGG ASKMEVTVEN SLANGPTTEL  180
EVSNSLANGP TTELGVSKGT SLANESADLP GVTCIMPEVT DKPVTDLGVI STVVEVSDTG  240
PVVHETTELE SAGEDYIASE ATAEPEDAGR ASCNVDDTAA LDEPQPPNCD LYLGNVQDGN  300
AIDTVTSTLQ PSRCDAAEGG GSVNFTTNIP VRARGPTFKG GVLKDKSVAP SVLLVLDVLT  360
RSIGKSGRTD VICYARRTGK RKAELLKVKK ENIDLEDGVI CEKEETLVST DRCECVLSTA  420
GSIDVKLADI KKDLMDNSAV GKVKKMKRNR FECNIDYCHM VFKTEAELAV HKKNMCTVSS  480
CSRHFRSHRY LRRHQSAHND DMPYKCPWDG CNMAFKWSWD RAEHFKVHAG AKPYKCTTPG  540
CSKIFKFVSD FTRHRRRCKP QR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A4e-4245155723129Lysine-specific demethylase REF6
6a58_A4e-4245155723129Lysine-specific demethylase REF6
6a59_A4e-4245155723129Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1375381RRTGKRK
2443449KKMKRNR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.395560.0ear| meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G329159
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G329159_P01
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008651091.10.0Krueppel-like factor 12 isoform X2
TrEMBLA0A1D6JNS00.0A0A1D6JNS0_MAIZE; Metal regulatory transcription factor 1
TrEMBLA0A317YCK40.0A0A317YCK4_MAIZE; Lysine-specific demethylase SE14
STRINGGRMZM2G329159_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114913241
Representative plantOGRP1198156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.14e-40relative of early flowering 6