PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G328814_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 314aa    MW: 34777.9 Da    PI: 9.3649
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G328814_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding331.4e-10103166147
                        TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqky 47 
                        r+ WT+e++e+lv+a  ++ ++            W  Ia+t +       +Rt+kq+k++w +y
  GRMZM2G328814_P01 103 RLEWTKEDEEKLVNAWFMHSNDpisgnnksgssFWGQIAATYNstsdpiRHRTAKQLKDHWVTY 166
                        789**********************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.02798167IPR017877Myb-like domain
SuperFamilySSF466892.17E-6100169IPR009057Homeodomain-like
SMARTSM007171.2E-5102169IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-7102167IPR009057Homeodomain-like
PfamPF002498.6E-7103166IPR001005SANT/Myb domain
CDDcd001672.03E-4105166No hitNo description
PfamPF143031.7E-6208284IPR029466No apical meristem-associated, C-terminal domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MSGWSPDLNT FTDLLQSDGS PTTLPLDASL RCFSLTPPCT ISGCASTTIP LSLSFVSIST  60
VFIWSTSNFP SRNSSLIPVA PLSVGSENQA EENPVPKEKR PKRLEWTKED EEKLVNAWFM  120
HSNDPISGNN KSGSSFWGQI AATYNSTSDP IRHRTAKQLK DHWVTYNREV TKFNGFYLQE  180
ERLRQSGADD AMVMDATMAR FEGKIGHPFK RHHWWQVVRH EPKWSAKHDL GSGSDSTANK  240
RTRLGVSGEY SSGGTEDTEE EVPRPVGHDR AKAAAGKTKT KGKGKEATSS ESTSEAFKMK  300
NLWGGLVKAK LLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1037880.0endosperm| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G328814
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G328814_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5176000.0EF517600.2 Zea mays clone BACs ZMMBBb0345O22, ZMMBBc0294D02, ZMMBBb0103L15, ZMMBBb0622H01, and ZMMBBb0335C07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020393346.11e-176glutathione S-transferase T3
TrEMBLA0A1D6KE421e-162A0A1D6KE42_MAIZE; Uncharacterized protein
STRINGGRMZM2G328814_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3263337