PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G328742_P01
Common NameLOC100193310, ZEAMMB73_142242
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 307aa    MW: 34542.9 Da    PI: 7.2363
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G328742_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B380.91.3e-2543140186
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS.......-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesg.......rsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                        f+k ltpsdv+k++rlv+pk++ae++        g+  ++  l +ed +        + W+++++y+ +s++yvltkGW+++vk+++L++gD
  GRMZM2G328742_P01  43 FEKPLTPSDVGKLNRLVIPKQHAERYfplsssgAGD--KGLILCFEDDDDdeaaaanKPWRFRYSYWTSSQSYVLTKGWSRYVKEKQLDAGD 132
                        99***************************9976444..5668999998889***************************************** PP

                        EEEEEE-S CS
                 B3  79 fvvFkldg 86 
                        +v F++++
  GRMZM2G328742_P01 133 VVRFQRMR 140
                        *****654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.6E-3736160IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.41E-2640144IPR015300DNA-binding pseudobarrel domain
CDDcd100171.92E-2241141No hitNo description
PfamPF023621.7E-2243140IPR003340B3 DNA binding domain
PROSITE profilePS5086311.81543153IPR003340B3 DNA binding domain
SMARTSM010198.5E-1843153IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MATNHLSQGQ HQHPQAWPWG VAMYTNLHYH HQQHHHYEKE HLFEKPLTPS DVGKLNRLVI  60
PKQHAERYFP LSSSGAGDKG LILCFEDDDD DEAAAANKPW RFRYSYWTSS QSYVLTKGWS  120
RYVKEKQLDA GDVVRFQRMR GFGMPDRLFI SHSRRGETTA TAATTVPPAA AAVRVVVAPA  180
QSAGADHQQQ QQPSPWSPMC YSTSGSYSYP TSSPANSQHA YHRHSADHDH SNNMQHAGES  240
QSDRDNRSCS AASAPPPPSR RLRLFGVNLD CGPGPEPETP TAMYGYMHQS PYAYNNWGSP  300
YQHDEEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-45381553113B3 domain-containing transcription factor NGA1
5os9_B1e-45381553113B3 domain-containing transcription factor NGA1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G328742
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G328742_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0355400.0BT035540.2 Zea mays full-length cDNA clone ZM_BFb0068L13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131920.20.0uncharacterized protein LOC100193310 isoform 2
SwissprotQ53QI01e-103Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLB4FEK20.0B4FEK2_MAIZE; B3 domain-containing protein
TrEMBLK4JBU60.0K4JBU6_MAIZE; ABI3VP1-type transcription factor (Fragment)
STRINGGRMZM2G328742_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.28e-46B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]