PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G327741_P01
Common NameZEAMMB73_816114
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 247aa    MW: 25832.6 Da    PI: 6.1623
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G327741_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000297193123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C  C++ F++   L  H++ H
  GRMZM2G327741_P01 71 YECVFCKRGFTTAQALGGHMNIH 93
                       99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.15E-66997No hitNo description
PROSITE profilePS5015710.997198IPR007087Zinc finger, C2H2
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MESGASGNME SKTASAGDEA MASPVPEPVL AAAGRAGEDE VPLPLPPLAV GAGDASTPPA  60
PAAAASPRPY YECVFCKRGF TTAQALGGHM NIHRRDRAKP TRDRDSSPAD ITTVSRNVEC  120
YSKYRHLLGS YPPIAQLSSI PIPIPISAGS SFGMYDTSSA AAAGARLDAE GGTGGNPNSV  180
SPRELSLFGN ASRDQDYLHL GLGRHGHMVG EGSRALAEGS SSERQESGEP ERELDLELRL  240
GRRPTRH
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G327741
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G327741_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1454771e-35AC145477.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1402B06, complete sequence.
GenBankAP0149611e-35AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020398667.11e-178zinc finger protein 11
TrEMBLK7V0211e-176K7V021_MAIZE; C2H2 and C2HC zinc fingers superfamily protein
STRINGGRMZM2G327741_P011e-177(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81112736
Representative plantOGRP1198045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.17e-14C2H2 family protein