PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G327349_P01
Common NameLOC103650062
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 581aa    MW: 60611.7 Da    PI: 8.1373
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G327349_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.14.8e-30293351259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +Dg++WrKYGqK+ kg+++pr+YYrCt+a  Cpv+k+v+r+aed++++++tYeg+Hnh+
  GRMZM2G327349_P01 293 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvACPVRKQVQRCAEDKTILVTTYEGHHNHP 351
                        7****************************9****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-32277353IPR003657WRKY domain
SuperFamilySSF1182904.18E-27285353IPR003657WRKY domain
PROSITE profilePS5081128.759287353IPR003657WRKY domain
SMARTSM007742.0E-35292352IPR003657WRKY domain
PfamPF031061.9E-25294351IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
METKPEPHRQ NHVRHEEAQE GEQAAVMEHG ALSLQRGVTN LFGRRHDEKQ AVGRRGEIRE  60
VDFFSRVSRP RDQDSGGGGG RGVSGGGRDD VYIELDLLTT TTAATTCAGD EVMQTKNQKI  120
EASAVEAELR RVVEENRRLR GILEELTRSY GALYQQLLLV TQGQHHQHRL HPADLMISRP  180
SLAHTHLTST AASQYSASTR LLLEARASSS AVAQPRAVED EVVSGAGDGA GVVEASPSLS  240
NGGNNDNDAA AADGKRKTSP PRESGEQAAA SSELPGRKAR VSVRARSEAP MISDGCQWRK  300
YGQKMAKGNP CPRAYYRCTM AVACPVRKQV QRCAEDKTIL VTTYEGHHNH PLPPAATTMA  360
NTTSAAAAML LSGPATSRDG AAALLGHPAA ALFHHSSSSI PYASTMATLS ASAPFPTITL  420
DLTQQAPGGL LPHGLHRPPG GMHPVVAAPA AAMPFPAPSP LAMFLPQRAP TVPTGLPVAP  480
RQQQQQQSVM ETVTAAIAAD PNFTTALAAA ISSVMAGAAH QAQQPTPRAS NIIGIPGDEA  540
NGGSAGAATA GPSPTTTAAG AHAASGGSPR FATQSCTTST T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-21283353877Probable WRKY transcription factor 4
2lex_A1e-21283353877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17886GGRGVSGGG
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G327349
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G327349_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008673951.10.0probable WRKY transcription factor 47 isoform X1
TrEMBLA0A1D6MRA70.0A0A1D6MRA7_MAIZE; Putative WRKY transcription factor 47
STRINGGRMZM2G327349_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.15e-60WRKY family protein