PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G327189_P01 | ||||||||
Common Name | LOC100381571, Zm.33041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | Dof | ||||||||
Protein Properties | Length: 229aa MW: 24188.5 Da PI: 10.5074 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 91.4 | 7.6e-29 | 66 | 121 | 4 | 58 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGg.grrkn 58 + l+cprC s++tkfCy+nny++ qPr++C+aCrryWt+GGalr v + grr+ GRMZM2G327189_P01 66 EPLPCPRCGSRETKFCYFNNYNVRQPRHLCRACRRYWTAGGALRRVASASpGRRRP 121 6789*****************************************98765255554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 4.3E-26 | 67 | 120 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 25.527 | 68 | 122 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 5.0E-17 | 70 | 108 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 70 | 106 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MAANLPDADA AGFKLFGKVI QPPDAQKRGA DEGDDPTPQT ALPPPPPPPP PPPPQQAPAA 60 GGPGAEPLPC PRCGSRETKF CYFNNYNVRQ PRHLCRACRR YWTAGGALRR VASASPGRRR 120 PRPTARSAPV AAAASSAPAA AEEDSFGGQK DAAGLLCDRE RVQFGRQSKR PPLQHARVTE 180 QCRCRSSKKT CFITASNELV RVLANPTGVL NPSAASLLAP RCAALRAGS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.33041 | 0.0 | tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G327189 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G327189_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT061655 | 0.0 | BT061655.1 Zea mays full-length cDNA clone ZM_BFb0169J01 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001167867.2 | 1e-161 | uncharacterized protein LOC100381571 | ||||
TrEMBL | A0A1D6NG26 | 1e-160 | A0A1D6NG26_MAIZE; Cyclic dof factor 2 | ||||
STRING | GRMZM2G327189_P01 | 1e-160 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14716 | 16 | 20 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34140.1 | 5e-20 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G327189_P01 |
Entrez Gene | 100381571 |
Publications ? help Back to Top | |||
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